RNA id: CI01000055_02060775_02077202.mRNA



Basic Information


Item Value
RNA id CI01000055_02060775_02077202.mRNA
length 1540
RNA type mRNA
GC content 0.48
exon number 6
gene id CI01000055_02060775_02077202
representative True

Chromosome Information


Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 2060578 ~ 2077486 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAATAAAAAGCTGAAGGCTCTGGAAGGGTGCACTTTGCCATTATTCATGGGAACTTCAAAGCCTTCGTAATTAAATTGGAAGAATACCTAACAAAGAAACAGCCACAACGGAAAACTAAAGGAGGGAGCGAGAGAGAGAGTAGGAAAAAAGGAGAAGGAGAACAAATACTGGCGCCAAAGTGAAGCCATGTCGAGCAATGTCTGGAAAGATCCTGAGGGATGTTGGGAAGTGGTGCAACCCCAGAGCACAGATGGATCTGGAGGTGGATCTGAGAGGCGAATCACATCATCTCTCCCCTCCGCCCACTCCAGGAATGCCACAGACTAGCGTACAGCCTGCTATGATGAGGCTGACCACCGTCTACCTCAGTTTGTTCAACCAGACTGAATGCAGTCTGAGACGAGACACAGGTGAGGAATACGACACAAAAGAACGAAGACCAAAAAAGCGAAGAAACAAATCTTGTTACAATTCACAATCCACAAGATGTGACGTGCCGTGTGTGGCTACCATTTCAGCAGCGAACGGCGTTGGGACAGCAGAGGCCCGGACAGCTGGTGTTGTGTGTGTGTTTGCCAGGACAGCGACTGTTAAGGTGATGAGTGAGGAGCGATTTGGTAGCAGCATGAGGCAGGTTATCTCTCAACAGCCTTATCATTCTTTATATCTGAGTAATAACACACCGTCTAGAGGAAAGCAGCAGCCTGCCATCGCACACGCCGCCCGTAGTAAAGCATACACACGCGGCCAAAAACAATCACCGCAGCCCCTCACGTGCCACCCAATTTCCAAGCACCTTCAGAAAAACACACCAGATGTGCCCCCATTATGGGGCAGCAAACCCCCACCGACGAACCATACTACAGCCGCCAAACACAACCACGCAATCCCATCCACAACGTCCTTTGGTGGACCTTTGGCTTTTAATAGGGTCTTTTTTAGTTCAGAGGAAAATATACAGTGTGGAATGAGCCTCCCTGTGACAGAGAACGTCTTGTTTACTGACACAATGCAAAAAGCCCAGCACGAAAGATGGGATTGGGGGGTGGGTGGTGAAGGGGGGCATCGGGGCAAGAAGTACAACGTACAGCATCGGGGGATGGGGGGGATGAGAGCAAGAGGAAACACAGAAGCCTGTTCATTCATGCTGGTGTATCCAATCGAATTAGAGCTCAGCTTAAAACCACCAAAACATCATGAATCAGCTTCACAGTTCCACCATTTTTCCCTCTCTTACTCCATTGAGTTTCTATAGCAGCCAGTTCACATGGAGGTCATGAGCGTTGCATAAGGCAATGGCTGTCCAACCACATTACCTGCAACAGTCCAAACAAAGCTGAAAATCTTGCAGGGTGACGCACCAATCTACCGTTTCACTGCAACATGAGAAAGCACCGTGTTTTGCACTGGGGTAAGTTTCATCATATACAACAAACCATTATGTAGCTGTAGATTATGACTACCTGAGGCTTGCTAGTCAAGACTGCTGGGTACTTATTGTATCACATCTTACTGAACAGCAGTGGGGGTCCACAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU270813 lncRNA upstream 17418 2041235 ~ 2043160 (+) True G238691
TU270793 lncRNA upstream 49625 1992402 ~ 2010953 (+) False G238673
TU270787 lncRNA upstream 78526 1973628 ~ 1982052 (+) True G238667
TU270779 lncRNA upstream 103128 1957136 ~ 1957450 (+) True G238660
TU270778 lncRNA upstream 103591 1956602 ~ 1956987 (+) True G238659
TU270879 lncRNA downstream 139151 2216637 ~ 2228752 (+) True G238754
TU270931 lncRNA downstream 179983 2257469 ~ 2259939 (+) True G238806
TU270950 lncRNA downstream 226755 2304241 ~ 2306652 (+) True G238825
TU270975 lncRNA downstream 292563 2370049 ~ 2370365 (+) True G238850
TU270987 lncRNA downstream 325012 2402498 ~ 2403127 (+) True G238862
CI01000055_02038946_02039783.mRNA mRNA upstream 20400 2038729 ~ 2040178 (+) True CI01000055_02038946_02039783
CI01000055_01961331_01962015.mRNA mRNA upstream 98130 1961013 ~ 1962448 (+) True CI01000055_01961331_01962015
CI01000055_01936268_01937799.mRNA mRNA upstream 122736 1936268 ~ 1937842 (+) True CI01000055_01936268_01937799
CI01000055_01897725_01900568.mRNA mRNA upstream 159777 1896274 ~ 1900801 (+) True CI01000055_01897725_01900568
CI01000055_01848384_01850380.mRNA mRNA upstream 209850 1847964 ~ 1850728 (+) True CI01000055_01848384_01850380
CI01000055_02152005_02168439.mRNA mRNA downstream 73905 2151391 ~ 2168459 (+) True CI01000055_02152005_02168439
CI01000055_02420414_02422942.mRNA mRNA downstream 342928 2420414 ~ 2423696 (+) True CI01000055_02420414_02422942
CI01000055_02425304_02429638.mRNA mRNA downstream 347818 2425304 ~ 2429719 (+) True CI01000055_02425304_02429638
CI01000055_02542526_02542861.mRNA mRNA downstream 464730 2542216 ~ 2542910 (+) False CI01000055_02542526_02542861
CI01000055_02601849_02607123.mRNA mRNA downstream 523244 2600730 ~ 2607308 (+) False CI01000055_02601849_02607123
TU270647 other upstream 391334 1668410 ~ 1669244 (+) True G238534
TU269823 other upstream 1640646 418925 ~ 419932 (+) True G237840
TU269631 other upstream 2039416 20902 ~ 21162 (+) True G237680
TU271353 other downstream 463636 2541122 ~ 2541235 (+) True G239173
TU271351 other downstream 463715 2541201 ~ 2541235 (+) True G239173
TU272036 other downstream 2084764 4162250 ~ 4213402 (+) True G239761
TU272029 other downstream 2176724 4254210 ~ 4255092 (+) True G239755
TU272088 other downstream 2186541 4264027 ~ 4264066 (+) True G239802

Expression Profile