Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU271351 |
| length | 35 |
| RNA type | TUCP |
| GC content | 0.42 |
| exon number | 1 |
| gene id | G239173 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000055 |
| NCBI id | null |
| chromosome length | 6774723 |
| location | 2541122 ~ 2541235 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU271292 | lncRNA | upstream | 78233 | 2456309 ~ 2462968 (+) | True | G239117 |
| TU271289 | lncRNA | upstream | 87230 | 2448318 ~ 2453971 (+) | True | G239116 |
| TU271268 | lncRNA | upstream | 98266 | 2441176 ~ 2442935 (+) | False | G239114 |
| TU271269 | lncRNA | upstream | 98266 | 2441773 ~ 2442935 (+) | True | G239114 |
| TU270987 | lncRNA | upstream | 138074 | 2402498 ~ 2403127 (+) | True | G238862 |
| TU271363 | lncRNA | downstream | 6650 | 2550768 ~ 2551066 (+) | True | G239178 |
| TU271369 | lncRNA | downstream | 14854 | 2558972 ~ 2560176 (+) | True | G239180 |
| TU271380 | lncRNA | downstream | 19512 | 2563630 ~ 2564524 (+) | True | G239185 |
| TU271374 | lncRNA | downstream | 62524 | 2606642 ~ 2607341 (+) | False | CI01000055_02601849_02607123 |
| TU271375 | lncRNA | downstream | 62524 | 2606642 ~ 2607435 (+) | False | CI01000055_02601849_02607123 |
| CI01000055_02425304_02429638.mRNA | mRNA | upstream | 111482 | 2425304 ~ 2429719 (+) | True | CI01000055_02425304_02429638 |
| CI01000055_02420414_02422942.mRNA | mRNA | upstream | 117505 | 2420414 ~ 2423696 (+) | True | CI01000055_02420414_02422942 |
| CI01000055_02152005_02168439.mRNA | mRNA | upstream | 372742 | 2151391 ~ 2168459 (+) | True | CI01000055_02152005_02168439 |
| CI01000055_02060775_02077202.mRNA | mRNA | upstream | 463715 | 2060578 ~ 2077486 (+) | True | CI01000055_02060775_02077202 |
| CI01000055_02038946_02039783.mRNA | mRNA | upstream | 501023 | 2038729 ~ 2040178 (+) | True | CI01000055_02038946_02039783 |
| CI01000055_02601849_02607123.mRNA | mRNA | downstream | 56612 | 2600730 ~ 2607308 (+) | False | CI01000055_02601849_02607123 |
| CI01000055_02608904_02621376.mRNA | mRNA | downstream | 64786 | 2608904 ~ 2621462 (+) | True | CI01000055_02608904_02621376 |
| CI01000055_02646852_02680018.mRNA | mRNA | downstream | 100232 | 2644350 ~ 2680037 (+) | True | CI01000055_02646852_02680018 |
| CI01000055_02729512_02734190.mRNA | mRNA | downstream | 185394 | 2729512 ~ 2734772 (+) | True | CI01000055_02729512_02734190 |
| CI01000055_02760466_02767918.mRNA | mRNA | downstream | 215993 | 2760111 ~ 2767934 (+) | True | CI01000055_02760466_02767918 |
| TU270647 | other | upstream | 871957 | 1668410 ~ 1669244 (+) | True | G238534 |
| TU269823 | other | upstream | 2121269 | 418925 ~ 419932 (+) | True | G237840 |
| TU269631 | other | upstream | 2520039 | 20902 ~ 21162 (+) | True | G237680 |
| TU272036 | other | downstream | 1618132 | 4162250 ~ 4213402 (+) | True | G239761 |
| TU272029 | other | downstream | 1710092 | 4254210 ~ 4255092 (+) | True | G239755 |
| TU272088 | other | downstream | 1719909 | 4264027 ~ 4264066 (+) | True | G239802 |
| TU272472 | other | downstream | 2621374 | 5165492 ~ 5166647 (+) | True | CI01000055_05163240_05166231 |
| TU272428 | other | downstream | 2992400 | 5536518 ~ 5543812 (+) | True | G240099 |
