RNA id: TU271375


Basic Information

Item Value
RNA id TU271375
length 621
lncRNA type sense_over
GC content 0.36
exon number 2
gene id CI01000055_02601849_02607123
representative False

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 2600730 ~ 2607536 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGTACCAGGAGAAACTGCGCTGGCTTTTTATAAGGCACGGAACCCCACAGACAAACCGGTGATAGGCATTTCAACCTACAATGTTGTACCTTTTGAGGCTGGACAATATTTTAATAAGATACAGTGTTTCTGTTTCGAGGAACAGAGGTTAAACCCACATGAGGAGGTGGACATGCCTGTATTCTTCTACATTGATCCAGAGTTTGATGAAGACCCCAGGATGGCACGAGTAGACAATATTATACTCTCATACACCTTTTTTGAAGCCAAGGAAGGACAGAAGTTACCAATCCCTGGTTATAGCTAATTGTGCTTTATTCAGAGACTTTTAATCAGAATTATCTTCAGGAGATTGTGTTCTGTAATCATTTTGATAATGATTACTGCATGTGATAATGTCTGATGTCTGAATAGTCTGAATCAAATGATTATAACAAAAATTTAACACTGATCAAGGCTGATCATCTGTCTATGAATTTTATGGTTAAAACAATAAAATAAGTTCTTATTTTTATACACCTTCAGAAACAAGCTATTACCCGTTTTGATATCAAACATCTAAACTGTATATGCAACATTGGTGAATTTGTGTCAATATAGTCTTTAGGACACTAGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271380 lncRNA upstream 42118 2563630 ~ 2564524 (+) True G239185
TU271369 lncRNA upstream 46466 2558972 ~ 2560176 (+) True G239180
TU271363 lncRNA upstream 55576 2550768 ~ 2551066 (+) True G239178
TU271292 lncRNA upstream 143674 2456309 ~ 2462968 (+) True G239117
TU271289 lncRNA upstream 152671 2448318 ~ 2453971 (+) True G239116
TU271432 lncRNA downstream 109682 2717117 ~ 2717394 (+) True G239228
TU271443 lncRNA downstream 137645 2745080 ~ 2745816 (+) False G239235
TU271440 lncRNA downstream 137904 2745339 ~ 2745665 (+) True G239235
TU271447 lncRNA downstream 140804 2748239 ~ 2748474 (+) True G239237
TU271448 lncRNA downstream 141122 2748557 ~ 2748883 (+) True G239238
CI01000055_02542526_02542861.mRNA mRNA upstream 63732 2542216 ~ 2542910 (+) False CI01000055_02542526_02542861
CI01000055_02425304_02429638.mRNA mRNA upstream 176923 2425304 ~ 2429719 (+) True CI01000055_02425304_02429638
CI01000055_02420414_02422942.mRNA mRNA upstream 182946 2420414 ~ 2423696 (+) True CI01000055_02420414_02422942
CI01000055_02152005_02168439.mRNA mRNA upstream 438183 2151391 ~ 2168459 (+) True CI01000055_02152005_02168439
CI01000055_02060775_02077202.mRNA mRNA upstream 529156 2060578 ~ 2077486 (+) True CI01000055_02060775_02077202
CI01000055_02608904_02621376.mRNA mRNA downstream 1469 2608904 ~ 2621462 (+) True CI01000055_02608904_02621376
CI01000055_02646852_02680018.mRNA mRNA downstream 36915 2644350 ~ 2680037 (+) True CI01000055_02646852_02680018
CI01000055_02729512_02734190.mRNA mRNA downstream 122077 2729512 ~ 2734772 (+) True CI01000055_02729512_02734190
CI01000055_02760466_02767918.mRNA mRNA downstream 152676 2760111 ~ 2767934 (+) True CI01000055_02760466_02767918
CI01000055_02808336_02822398.mRNA mRNA downstream 200901 2808336 ~ 2822782 (+) True CI01000055_02808336_02822398
TU271353 other upstream 62524 2541122 ~ 2541235 (+) True G239173
TU271351 other upstream 62524 2541201 ~ 2541235 (+) True G239173
TU270647 other upstream 937398 1668410 ~ 1669244 (+) True G238534
TU269823 other upstream 2186710 418925 ~ 419932 (+) True G237840
TU269631 other upstream 2585480 20902 ~ 21162 (+) True G237680
TU272036 other downstream 1554815 4162250 ~ 4213402 (+) True G239761
TU272029 other downstream 1646775 4254210 ~ 4255092 (+) True G239755
TU272088 other downstream 1656592 4264027 ~ 4264066 (+) True G239802
TU272472 other downstream 2558057 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 2929083 5536518 ~ 5543812 (+) True G240099

Expression Profile