Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU271470 |
| length | 1016 |
| lncRNA type | sense_over |
| GC content | 0.42 |
| exon number | 1 |
| gene id | G239256 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000055 |
| NCBI id | null |
| chromosome length | 6774723 |
| location | 2843681 ~ 2844696 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU271449 | lncRNA | upstream | 94304 | 2749165 ~ 2749377 (+) | True | G239239 |
| TU271448 | lncRNA | upstream | 94798 | 2748557 ~ 2748883 (+) | True | G239238 |
| TU271447 | lncRNA | upstream | 95207 | 2748239 ~ 2748474 (+) | True | G239237 |
| TU271443 | lncRNA | upstream | 97865 | 2745080 ~ 2745816 (+) | False | G239235 |
| TU271440 | lncRNA | upstream | 98016 | 2745339 ~ 2745665 (+) | True | G239235 |
| TU271473 | lncRNA | downstream | 23788 | 2880056 ~ 2880617 (+) | True | G239257 |
| TU271489 | lncRNA | downstream | 46540 | 2902808 ~ 2903457 (+) | True | G239273 |
| TU271505 | lncRNA | downstream | 71665 | 2927933 ~ 2928136 (+) | True | G239289 |
| TU271506 | lncRNA | downstream | 72854 | 2929122 ~ 2929377 (+) | True | G239290 |
| TU271508 | lncRNA | downstream | 75546 | 2931814 ~ 2932097 (+) | True | G239292 |
| CI01000055_02808336_02822398.mRNA | mRNA | upstream | 20899 | 2808336 ~ 2822782 (+) | True | CI01000055_02808336_02822398 |
| CI01000055_02760466_02767918.mRNA | mRNA | upstream | 75747 | 2760111 ~ 2767934 (+) | True | CI01000055_02760466_02767918 |
| CI01000055_02729512_02734190.mRNA | mRNA | upstream | 108909 | 2729512 ~ 2734772 (+) | True | CI01000055_02729512_02734190 |
| CI01000055_02646852_02680018.mRNA | mRNA | upstream | 163644 | 2644350 ~ 2680037 (+) | True | CI01000055_02646852_02680018 |
| CI01000055_02608904_02621376.mRNA | mRNA | upstream | 222219 | 2608904 ~ 2621462 (+) | True | CI01000055_02608904_02621376 |
| CI01000055_02883892_02885021.mRNA | mRNA | downstream | 27495 | 2883763 ~ 2885369 (+) | True | CI01000055_02883892_02885021 |
| CI01000055_02886631_02891978.mRNA | mRNA | downstream | 30363 | 2886631 ~ 2892053 (+) | True | CI01000055_02886631_02891978 |
| CI01000055_02892577_02901154.mRNA | mRNA | downstream | 36207 | 2892475 ~ 2901826 (+) | True | CI01000055_02892577_02901154 |
| CI01000055_03194041_03223541.mRNA | mRNA | downstream | 336769 | 3193037 ~ 3223561 (+) | True | CI01000055_03194041_03223541 |
| CI01000055_03392185_03445744.mRNA | mRNA | downstream | 535917 | 3392185 ~ 3446689 (+) | False | CI01000055_03392185_03445744 |
| TU271353 | other | upstream | 299563 | 2541122 ~ 2541235 (+) | True | G239173 |
| TU271351 | other | upstream | 299563 | 2541201 ~ 2541235 (+) | True | G239173 |
| TU270647 | other | upstream | 1174437 | 1668410 ~ 1669244 (+) | True | G238534 |
| TU269823 | other | upstream | 2423749 | 418925 ~ 419932 (+) | True | G237840 |
| TU269631 | other | upstream | 2822519 | 20902 ~ 21162 (+) | True | G237680 |
| TU272036 | other | downstream | 1305982 | 4162250 ~ 4213402 (+) | True | G239761 |
| TU272029 | other | downstream | 1397942 | 4254210 ~ 4255092 (+) | True | G239755 |
| TU272088 | other | downstream | 1407759 | 4264027 ~ 4264066 (+) | True | G239802 |
| TU272472 | other | downstream | 2309224 | 5165492 ~ 5166647 (+) | True | CI01000055_05163240_05166231 |
| TU272428 | other | downstream | 2680250 | 5536518 ~ 5543812 (+) | True | G240099 |
