Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU271575 |
| length | 415 |
| lncRNA type | sense_over |
| GC content | 0.43 |
| exon number | 1 |
| gene id | G239347 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000055 |
| NCBI id | null |
| chromosome length | 6774723 |
| location | 3353642 ~ 3379463 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU271761 | lncRNA | upstream | 31513 | 3347268 ~ 3347536 (+) | True | G239526 |
| TU271734 | lncRNA | upstream | 59589 | 3316914 ~ 3319460 (+) | True | G239499 |
| TU271733 | lncRNA | upstream | 61678 | 3316914 ~ 3317371 (+) | False | G239499 |
| TU271744 | lncRNA | upstream | 71875 | 3306896 ~ 3307174 (+) | True | G239509 |
| TU271689 | lncRNA | upstream | 140852 | 3237988 ~ 3238197 (+) | True | G239457 |
| TU271771 | lncRNA | downstream | 112819 | 3509117 ~ 3518130 (+) | True | G239535 |
| TU271782 | lncRNA | downstream | 184603 | 3580901 ~ 3581110 (+) | True | G239546 |
| TU271801 | lncRNA | downstream | 228485 | 3624783 ~ 3625005 (+) | True | G239565 |
| TU271840 | lncRNA | downstream | 308726 | 3705024 ~ 3705225 (+) | True | G239598 |
| TU271841 | lncRNA | downstream | 311169 | 3707467 ~ 3708004 (+) | True | G239599 |
| CI01000055_03194041_03223541.mRNA | mRNA | upstream | 155488 | 3193037 ~ 3223561 (+) | True | CI01000055_03194041_03223541 |
| CI01000055_02892577_02901154.mRNA | mRNA | upstream | 477223 | 2892475 ~ 2901826 (+) | True | CI01000055_02892577_02901154 |
| CI01000055_02886631_02891978.mRNA | mRNA | upstream | 486996 | 2886631 ~ 2892053 (+) | True | CI01000055_02886631_02891978 |
| CI01000055_02883892_02885021.mRNA | mRNA | upstream | 493680 | 2883763 ~ 2885369 (+) | True | CI01000055_02883892_02885021 |
| CI01000055_02852816_02861925.mRNA | mRNA | upstream | 516404 | 2852816 ~ 2862645 (+) | False | CI01000055_02852816_02861925 |
| CI01000055_03453919_03456503.mRNA | mRNA | downstream | 57032 | 3453330 ~ 3456648 (+) | True | CI01000055_03453919_03456503 |
| CI01000055_03471384_03476628.mRNA | mRNA | downstream | 74456 | 3470754 ~ 3476855 (+) | True | CI01000055_03471384_03476628 |
| CI01000055_03482922_03497329.mRNA | mRNA | downstream | 86144 | 3482442 ~ 3497616 (+) | True | CI01000055_03482922_03497329 |
| CI01000055_03532706_03537026.mRNA | mRNA | downstream | 135076 | 3531374 ~ 3537194 (+) | True | CI01000055_03532706_03537026 |
| CI01000055_03539420_03563869.mRNA | mRNA | downstream | 142850 | 3539148 ~ 3563895 (+) | True | CI01000055_03539420_03563869 |
| TU271353 | other | upstream | 834931 | 2541122 ~ 2541235 (+) | True | G239173 |
| TU271351 | other | upstream | 834931 | 2541201 ~ 2541235 (+) | True | G239173 |
| TU270647 | other | upstream | 1709805 | 1668410 ~ 1669244 (+) | True | G238534 |
| TU269823 | other | upstream | 2959117 | 418925 ~ 419932 (+) | True | G237840 |
| TU269631 | other | upstream | 3357887 | 20902 ~ 21162 (+) | True | G237680 |
| TU272036 | other | downstream | 765952 | 4162250 ~ 4213402 (+) | True | G239761 |
| TU272029 | other | downstream | 857912 | 4254210 ~ 4255092 (+) | True | G239755 |
| TU272088 | other | downstream | 867729 | 4264027 ~ 4264066 (+) | True | G239802 |
| TU272472 | other | downstream | 1769194 | 5165492 ~ 5166647 (+) | True | CI01000055_05163240_05166231 |
| TU272428 | other | downstream | 2140220 | 5536518 ~ 5543812 (+) | True | G240099 |
