RNA id: TCONS_00016766


Basic Information

Item Value
RNA id TCONS_00016766
length 3606
RNA type mRNA
GC content 0.39
exon number 12
gene id XLOC_008365
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14141045 ~ 14173592 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAGACTCTGCAGTCATGCACTTAAGATCGGTGTTTGTCTTATTATGGATGCTGCGGTTGTCCACGTCTACTGGAATCAAACTAGATGGAAATGGATACATTGACATTACAATTGCAATCAGTTCAAAAGTTCCAGAGGACGACAAACTCATTgataaaatcaagGACATGGTCACTGAAGGGTCAGTTCATCTGTATAAAGCATTGGATAAAAAGGTCTATTTCAAAGAAGTTACAATACTAGTGCCACTCAACTGGAATAGTAAGGGCTTTACCAAAGCAAGAACAGAGTTATTCGAAACGGTATGACAAATTACGCCACTATCTTATTTGTTAAATCTGAATGTTCATTCATTTCACTTACAAGATATATTCCTGTATGAAATGCAGGGCATGATAAGAATCGATAATCCTCATCCAGCATACGGTGATGAACCGTACACTAACCAGTATGGTGAATGTGGAGCCGAGGGTCAGTACATTCATTTCACACCAAATTTCCTCCGAGACGACAAACTCATTAGGCTTTACGGGTCAAGAGGAAAGGTCTTGGTGCATGAATGGGCTCATTTGAGATGGGGCGTATATGATGAATATAGTGAAAAAACTCCATTCTACCGCTCTGCCAGTGGCAAGATTGAAGCCACAAGGTCAGGAATGTTAACACAAATTaagtattttctttaaaaatctatttGAAAATGATCTCAACTATTGATTTCTTACTGTTCATCAGGTGTAGCAAAAACATTGAAGGTCAGCTTTATGATGTTACAGCTGATCCTCTTCAACCGTGCCAGAATGATCCACAAACTTCACTACCAACTGATGGGTGCAGGTTTATTCCCAACAAATATCAAAGCACAGACAGCTCCATGATGTCTTTGCCAAGCCTGGATTCTgTGATCACATTTTGTCGTGAAAGCGAGCACAATTATGAAGCCCCAAACTTGCAAAATGCAAAATGCAGCAACAAAGCGACTTGGACCGTAATATTTGAGGATTCTGTGGATAAAGACGCACTTCGTTCTCTAAAACCAATGGCATCGACTCCACCAGCGCCAAATTTCAAAGTTGTGCAGCGGATGCAAAGAACTGTTTGTCTGGTTCTTGATGTCTCTGGAAGCATGAAAGGTTCACGTATTCTTCGACTGCAGCAGGCTTCAGCTCATTTCCTGCAGAACATCATTGAGGATCAGTCCAGCGTGGCACTTGTTACCTTTAGTACTGATGCTTCTACTCTCAGTGCCTTGACTACTATTGACAAAGAGTCCACACGAGAGAATCTTGTCAAATTGTTGCCTAATGTAGCAGAAGGAGCGACAAATATGTGTAAAGGCCTTAACCTAGGCTTGCAGGTACTCAAAACTGACAATCAAGATGTATTGGGAGATGAAATCATTTTTTTGACAGATGGTGAAGCAACGGATACCCTTAGTAATTGTGTTCCAGCAGCGATTAACAGTGGAGCCATAATACACACAATAGCTTTGGGTGATAAAGCAGATAAAGCACTGAGAGAAATGGCTGACAAAACTGGGGGGAAGTTTATCACAGCCAGTGATGACGTTCTCTCTAATCAGCTACTGAATGGATTTTCTTCACTAATAATGCCAACAGGAAACCAAACAAAAGATCCAGTTCAGATAGACAGTGTGGGAATAAAAACATCTGACTGGTTCAATGGGACAGTATCAGTGGATCAGACTATTGGTACCAAAACCAGCTTTACAATAACCTATGAAACCAAATTACCTCGCATTTCCATACAGTCCCCAAGTGGTTTAACCTACAGTCAAACGCAGATGCGTCATGATGAACCAGCAAAAACGGTCACTCTAAAAGTTCCAGGTACTGCACAGACTGGAGACTGGAAATACAGTATCTTAAGCCCAACACTTCAGTCTCTGACTGTAACAGCGACAAGTCAAGCGGCACGTGCAAATGTTCCTCCCATTACTGTCAAAGCCCAAATGAACCAACAGTTTAGCGATGGCAGTAAACCCATGATAGTGTTTGCTGAAGTAGTTCAGAATTACAAGCCTCTCATAAAGGCAGAAGTGTGGGCTACGCTGGAGTCTGAATCCGGGACTGTACATGAATTACAACTCCTTGACAATGGAGCAGgAGCAGATACTTTCAAAGATGATGGAGTCTATTCTAGATATTTCACACGGATGAAAAAGGGGAGAAGCAGCTTGAAAGTAAGGGTTAAAAATAAAGATGGACAAGCCAGATTTACTCTTCAAAAAAGAGGTGGTGCACCATACGTACCCGGATATGTGGTGAACGGTGTAGTGGAGCTGAACCCACCAAAGCTTTCAGTTTCTGAGGAACTACCAGAGGTTGGAAGCTTCACCAGAACAGCCACTGGTGAGAGTTTTGAGGTGAGTCTAACAAGCTCAAAGCCACCAAAATTCCCTCCATGCAAAATCATAGATCTGAGTGCTGAGATCCAGGAGGACGCTGTGCTTCTCAGCTGGACGGCTCCTGGTGAAGACCTTGATGAAGGGTCAGCTAAATCCTATGACATCAGGTGGAGTTTTGAAGTGAAAGACCTCCTCTTCAACTTCAGCAATGCTCACGTAGTCAACACATCTGTCATCTCACCACAGGTGTTTGGATCAGTCGAACAGCATTTGTTTAATCTCAGTTTTCCCATCCAAAATGGCACTATACTCTTTTTTGCGATTCAGTCTGAGGACAACGAAAAGCTGAAATCTGAAATGTCTAACGTGGCTTCAGGTTTACAGATTATCCCTAATCCAAACACAGGAGATCTAGACCTGAAGCTGATTTTTATTGCTATTTCTGTTTGCCTGGCGTCTGTGGTGGTTATTGGAATTTTTGGAATTACAACATGGGCTTTGACACGAAAGAAACTTTCTGATTCCTAGAGATAAACCAACATTAAAATTAACCCAAAGAAAAAGTTTATATCTTAAAACTGCATTGTACACCTTCTGCTTTCAATAAAAGTCATGTTTGGTGAAGACATTGAAACTGGGTAAATTTGGAAATGTTTTGTGAGGGAATTTTGATTGAGATGATgattactgtatatatttcttGAGATTATTATGTGCTCTGGAAACGATGTACTTTACCATCACACAGTAACTATTGTTGTTTTTAAGCTATGaatcagtttttatttgtattttgtctGTTTACATTTGAAATTTAAAGTTTTACCAATTTTATTCTGTTACTATTTTTTCTTTGCAGttttttcattataattttaGTGTAATAATGCCAATATATGGTAATACCTTGGaaatataaggttctatctgcattctgaataattttgagatattgagtttcaaagattttgcattccatatagcaaacagaatgtgtgtaacatttgttttttaaataaaacttataaataacttataaaaaacttgtaaataagttgtcatttaataagaatatgtcaataactcaattttgacaaaaatagcAGATAAAACCGGATCATTCTAAGGTGACTATGATATGTCTTAGGTGCTttgcataaacaaacaaataaataaacaaatatcctCCCCTCTTTATATTATAACATCTGTTGAATTATTTATATCTGGTAAGGAC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6221 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in asthma and chronic obstructive pulmonary disease. Orthologous to human CLCA1 (chloride channel accessory 1).

Ensembl:

ensembl_id ENSDART00000161891

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016763 lncRNA upstream 23482 14141055 ~ 14141992 (+) False XLOC_008365
TCONS_00016760 lncRNA upstream 112008 14045121 ~ 14053466 (+) True XLOC_008363
TCONS_00016756 lncRNA upstream 656106 13421514 ~ 13509368 (+) False XLOC_008359
TCONS_00018763 lncRNA upstream 656156 13505699 ~ 13509318 (+) True XLOC_008359
TCONS_00018762 lncRNA upstream 1074728 13001210 ~ 13090746 (+) True XLOC_008358
TCONS_00018910 lncRNA downstream 75797 14249389 ~ 14249929 (+) True XLOC_008368
TCONS_00016776 lncRNA downstream 681297 14854889 ~ 14855766 (+) False XLOC_008373
TCONS_00016777 lncRNA downstream 682604 14856196 ~ 14857945 (+) False XLOC_008373
TCONS_00018912 lncRNA downstream 1174050 15347642 ~ 15351457 (+) False XLOC_008379
TCONS_00018911 lncRNA downstream 1174050 15347642 ~ 15351457 (+) True XLOC_008379
TCONS_00016765 mRNA upstream 1928 14154174 ~ 14163546 (+) True XLOC_008366
TCONS_00016762 mRNA upstream 18125 14141045 ~ 14147349 (+) False XLOC_008365
TCONS_00016761 mRNA upstream 45043 14109652 ~ 14120431 (+) True XLOC_008364
TCONS_00016759 mRNA upstream 178713 13984879 ~ 13986761 (+) True XLOC_008362
TCONS_00016754 mRNA upstream 1706139 12435975 ~ 12459335 (+) False XLOC_008355
TCONS_00016768 mRNA downstream 28522 14202114 ~ 14206065 (+) True XLOC_008367
TCONS_00016769 mRNA downstream 205237 14378829 ~ 14420564 (+) True XLOC_008369
TCONS_00016770 mRNA downstream 419032 14592624 ~ 14600296 (+) True XLOC_008370
TCONS_00016771 mRNA downstream 469049 14642641 ~ 14667095 (+) True XLOC_008371
TCONS_00016772 mRNA downstream 653374 14826966 ~ 14828918 (+) False XLOC_008372
TCONS_00016758 other upstream 207624 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016757 other upstream 640486 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016731 other upstream 2599965 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 4269488 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 4853996 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016791 other downstream 1220650 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 2345375 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 2656170 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016824 other downstream 2926885 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016835 other downstream 3200197 17373789 ~ 17373915 (+) True XLOC_008411