RNA id: TCONS_00016772


Basic Information

Item Value
RNA id TCONS_00016772
length 1953
RNA type mRNA
GC content 0.35
exon number 1
gene id XLOC_008372
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14826966 ~ 14853579 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGCGGTTCTTAATGTCAGATGTGTGCAGAATGTCCAGTTATAACAGCAGTGGCGATGAGCAGATGCAGCTGATTCAGGTGGACCCCGTGCGGAGGAACATCTCACTGGCGCTGACACAGGTCATCGTGTGGCCCTTTATCTATCTCATCTTCCTCATGCTCCTCATATTCTCCAAGAAAGAGACTTTTACAACTGAAATGCGCTATATATTGTTCGGACACTCTTTGTTAGTAGACTTAACGTTTCTTCTTTTGACGGATTTTGTGGTGCTTTTGTCATACAACCTTGTTTTATTACCTCTGCAGTTCTGCATCCCTGTTTGCATGTTTATAGAAACAGTGGCAGTAAGTGCACCTCTGACCGTCGGCGCCATGTGTGTGGAGCGTTATGTGGCCATTTGCCTGCCTCTTAGACACCATGCCATCTCCACCTCCAGAAGAGCCTTCATGGTGATTTTAATGATCTGGATCGTGAGCTCCATAAACCCGTTTATTGACATGTTCATTCTCGTCAGCACAGCCTCTCATGAATACTTGACTCAGCTCACACACTGCCACTATGAGATTATGATCCCTGAAAAGATCCGCGTGTTTGCCAGGGGGTTGTTGTACATTGTGGGGCTCgtggttattttaataattgagatattttgctatgtaaTGATTTATCTCGCTGCTCGTGCTGCATCTGGTGACAATAAGAAATCTGCGTCGAAAGGGCAGCGCACTATTTCCCTGCACATACTTCAGCTGTTTTTATGCACTGCAGAGGTGATGTGCCCTTACATTGAGTCTGTGGTCATGCAGTATGATATTCAGTCATATCTGACTGTACGATTTATAAACTTCCTGGCATTCAGCATCACTTCTAGAGCGGTCAGTCCTCTTGTGTATGGATTTAGAGATGAGAAATTTTATACAGCGATGGTTTACTTTATCAGAtgcaaaaacaacacaatctctTCTGACATTGATAAGCAAACAtgaaatacatgtttttaaaggTTAAACTTATGCTAAAACATCTATTGACTTTactaaatgtaactgaaaaatgttatgtaatttaaaataaattagatcaTTTTTATTGAGAGCATCACAAAAGCCTCTTGATGCATATTTTTGAATGACTTGCTTTACTAAGTTGTACTTATTTGTTTGTGCATATTAACTGCATTACtgaaatatgaagagttcagatgcaaaaacctctaaatgccatctaaacTTTTTTTCTCAGGCTCTTGTGGGTATAGTCATTTTAATTATATGTCAATAAAAAGGGTATTTTCATTGCCTGTAAAGTGAAATAACTTCACATAAACAGAAGATTGGGAAAAAATTTCAAGATtgggaaaaaagtttttgcatctgaactttagATTTTAAAATTGTTAGATACAGTTAGCAGATTAACTTGTATTTaaccatttatttataattacagatTTTAATGGCCTAATGATATATTATGTATAATTATTAGATTTTTAGATTGATGTTCATTTCAAATGTTCACACTGGAAAATAAGTCGGATTCACAGATAAGTGTATGCAACATGTAATTACATAAAGTTATCTTTGTCTCTTTTTTTAGCTAAATAGgtatttagaatttttatttgacaaagaCATCATTGTTGTTTGCTATTAATAAAATGTGTCTCATAAGTGATATGTTGGTAATAATAGCAAATACAATACAAACAACCAAGTGTCACactcaaaacatttcattttatatttattgaggATAAACTGgatcatatttaataatttaaacacaCTTAATAAAAGAGTGTGTCTGCTGTGTCCTGTTCAGTActcatttgtttttgtctttttttaattttttttacatactgtactgtaaatatcATATTGTTTcctttaacaacacacatgaCCAAATCAACTTGAAATAAACCAAGTACTCCCTTTTTCATCTCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-44 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000157912

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018910 lncRNA upstream 577037 14249389 ~ 14249929 (+) True XLOC_008368
TCONS_00016763 lncRNA upstream 684974 14141055 ~ 14141992 (+) False XLOC_008365
TCONS_00016760 lncRNA upstream 773500 14045121 ~ 14053466 (+) True XLOC_008363
TCONS_00016756 lncRNA upstream 1317598 13421514 ~ 13509368 (+) False XLOC_008359
TCONS_00016776 lncRNA downstream 25971 14854889 ~ 14855766 (+) False XLOC_008373
TCONS_00016777 lncRNA downstream 27278 14856196 ~ 14857945 (+) False XLOC_008373
TCONS_00018912 lncRNA downstream 518724 15347642 ~ 15351457 (+) False XLOC_008379
TCONS_00018911 lncRNA downstream 518724 15347642 ~ 15351457 (+) True XLOC_008379
TCONS_00016790 lncRNA downstream 561983 15390901 ~ 15394658 (+) False XLOC_008381
TCONS_00016771 mRNA upstream 159871 14642641 ~ 14667095 (+) True XLOC_008371
TCONS_00016770 mRNA upstream 226670 14592624 ~ 14600296 (+) True XLOC_008370
TCONS_00016769 mRNA upstream 406402 14378829 ~ 14420564 (+) True XLOC_008369
TCONS_00016768 mRNA upstream 620901 14202114 ~ 14206065 (+) True XLOC_008367
TCONS_00016766 mRNA upstream 653374 14165474 ~ 14173592 (+) False XLOC_008365
TCONS_00016774 mRNA downstream 21902 14850820 ~ 14853579 (+) True XLOC_008372
TCONS_00016775 mRNA downstream 25748 14854666 ~ 14858189 (+) False XLOC_008373
TCONS_00016778 mRNA downstream 27389 14856307 ~ 14857464 (+) True XLOC_008373
TCONS_00016779 mRNA downstream 32417 14861335 ~ 14964241 (+) True XLOC_008374
TCONS_00016780 mRNA downstream 344693 15173611 ~ 15218956 (+) True XLOC_008375
TCONS_00016758 other upstream 869116 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016757 other upstream 1301978 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016731 other upstream 3261457 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 4930980 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 5515488 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016791 other downstream 565324 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 1690049 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 2000844 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016824 other downstream 2271559 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016835 other downstream 2544871 17373789 ~ 17373915 (+) True XLOC_008411

Expression Profile

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