RNA id: TU272928


Basic Information

Item Value
RNA id TU272928
length 209
lncRNA type sense_over
GC content 0.25
exon number 1
gene id CI01000055_06513312_06529035
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6512366 ~ 6529510 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAACTTTTATTATTTTTAGTATAATAAAAACATTTAAGAAGTGATTCTGTTTCAGTTAAAAAGTAGATTAGGCCAAGAATCTGTGCATAAAAATTAAAAAAAATATCAATATAATTAGAATTTTGTCTCAGATGAAAAGATTGGGTAATTTCAAAACTACAGTAGTGCTTAAGATTGTGATATGACAGGCGGTTTTCCTTTTTTTAAA

Function

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K03129 TAF4; transcription initiation factor TFIID subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272701 lncRNA upstream 4261 6502052 ~ 6508423 (+) True G240315
TU272741 lncRNA upstream 13947 6496669 ~ 6498737 (+) True G240355
TU272710 lncRNA upstream 22517 6488005 ~ 6488500 (+) True G240324
TU272902 lncRNA upstream 98195 6414192 ~ 6414489 (+) True G240481
TU272900 lncRNA upstream 99295 6412854 ~ 6413389 (+) True G240479
TU272980 lncRNA downstream 127736 6640628 ~ 6641114 (+) True G240550
TU272985 lncRNA downstream 138173 6651065 ~ 6651326 (+) True G240555
TU272987 lncRNA downstream 140602 6653494 ~ 6653702 (+) True G240557
TU272991 lncRNA downstream 144634 6657526 ~ 6657809 (+) True G240561
TU272993 lncRNA downstream 157272 6670164 ~ 6670368 (+) True G240563
CI01000055_06487661_06489302.mRNA mRNA upstream 23298 6487661 ~ 6489386 (+) False CI01000055_06487661_06489302
CI01000055_06472841_06481094.mRNA mRNA upstream 31528 6472841 ~ 6481156 (+) True CI01000055_06472841_06481094
CI01000055_06443549_06446405.mRNA mRNA upstream 66243 6443549 ~ 6446441 (+) True CI01000055_06443549_06446405
CI01000055_06439930_06442140.mRNA mRNA upstream 70531 6439864 ~ 6442153 (+) True CI01000055_06439930_06442140
CI01000055_06432420_06434344.mRNA mRNA upstream 78198 6432420 ~ 6434486 (+) True CI01000055_06432420_06434344
CI01000055_06530845_06542679.mRNA mRNA downstream 17099 6529991 ~ 6542725 (+) True CI01000055_06530845_06542679
CI01000055_06716393_06716976.mRNA mRNA downstream 203501 6716393 ~ 6716976 (+) True CI01000055_06716393_06716976
CI01000055_06718992_06719248.mRNA mRNA downstream 206100 6718992 ~ 6719559 (+) True CI01000055_06718992_06719248
CI01000055_06720233_06726592.mRNA mRNA downstream 206978 6719870 ~ 6727509 (+) True CI01000055_06720233_06726592
TU272693 other upstream 171519 6334892 ~ 6341165 (+) True G240308
TU272730 other upstream 318784 6163860 ~ 6164011 (+) True G240344
TU272705 other upstream 423925 6086825 ~ 6086887 (+) True G240319
TU272586 other upstream 895093 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272585 other upstream 896331 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453