RNA id: TCONS_00016784


Basic Information

Item Value
RNA id TCONS_00016784
length 5874
RNA type mRNA
GC content 0.48
exon number 26
gene id XLOC_008377
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15258758 ~ 15311768 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTAATGGATCTGTGCTGCAGTTCTGGGACGGCGAGGGCTCTCTTGCAGATTCTCTGTCTGATCACAGCAGTGTGCTAATGGACAGTGAGCTCAATGACCCTCAGTATGATCAGAGTCTTCTGGAGAACCTCTTCTACAAACCACCTGTAAGCCATGCAATGCAACCCAATGAACTAGTTCTGCAAACATTGCTGTGTATAGCTGTAAtatgttttcttattttagatGTCAGATGAATGTTTGGAGGAGGACCATCATAGAAAAGGCACAACAGAGAAGCCTGTGCACACAAATCCAGCCAAAAATGCCCGGCTTGATCCTGGTGTGCAACATTCAGAAGCAGGAGCTGATTTACCTGGGCTTGGCATGGAAAAAATAACTTTGCTTGGTGATATTCGTTTTGCGAGGGTCACTGTCAGTGAGTTAAAACTTCCTACAGAAAGTACCTCAAAAAGTCTGTCTAGAAAAGGAAGACCACCTCGGCCTCTCTCCACAAAGAAGTGTTTTTATATTGTAGAGTACCTCTTTCCACTGCTCTCTGCTGGGTATGAGAGTGTTCAGCAGGTTCCTTCAGAGATTACAAAAGTTGTCTCTAGTAAAGTTACAGATGGTGGTGAGTACATTAGTTTTGAAGAACTTTAATAAAACTTAAGCTGACAACaatctgctatttatttatttatttatttatttattcattcattttgctttagcTGTGTCGTTTCAGCATCAAAGTTTGTTTCCAGTGAAGTTCAGTAGGTCATCTATTAAACAGTGGTGCGAGATGAAGGTCACATTCAAGATCTACTCCAAATATAGTCTTCaaaaaacagtaagtgcaacgtGTCAATCATAAAATCTACACACTTCAGACTAAGCTGAAAACTAAAGACTCTTGTATGATTTTATCTGGCCTGATCTTGCCTTGTTTGTTGTTTAGCCTATTCTGATTGGCTCAGCTATGTTTCCACTGAGCTCCTTGATGCAGAGTGAATCGCTGAGCATTTCTTCTGCCCTGCCTGTACAAACAGCTAATGGAAACACTGATAAGCAACAAGTTGGTCCTCTGAAGgtgACCTTTGAGTTAGCAGAGGACAAGAATAATTTCTCCTCTAAAAAAAGGCCTGCAAAGCAAATGCTAAGTCCACAGAGACCTCTCCCTTCCCTTCTGACAGAAGAACATGATGAACCGAAGGGTTTATGTGTGAGCAACAGCAGGAGAGACCCGTCACCTCAAGCGCAGAGTATTCTGATTCCTCCTGCTAGATCACGATCCACGTCACCACACGTCAGATTCCAGAGCTCTATTCAGCAGCAGGAAATGGAGGACACTGAGATTCTGCTGCACATGTTACTCATGGTGCCTAATGGGAAAGATTTGAACTGTGCACCTATGCAGCCCAATGTCTACCTGAACTGCAAGCTTCTTGGATCTGATGAAACTGCCCGATCTGCAGTGAGCTGGGGTCAGAAACATCCAACATTCAGCTTTACTCAGGTGGCTCCAGTCGCACTGAGCCCCAGACTGTTGGAGAGAATGAAGAATAACATGATGGTCATTGAAGTCTGGTTGAGGGCCAGCAGCTCAGATCATGATAAACTCCTCGGCTTGGTAAAACTACCACTCCACCAGTTTTACATGTCCTTCCGagaCCCCAAGATCTCGGAGCTGCTCCTGCAGTCTCAGTATCCAGTGGTTGGAGTGGACAGTTATATGCCTGTGGTGGATGTATTTAGCGGCAGCACGCGAGGAAACCTCAGGGTGTGTTTAGCAATGGGTCAAGCACAGCAGGTCATGGCCCTGCAGCGGATGAGGGACGACGAGCTGAGCCACGACACACCAGTGCCTCGACCAGCACACATGCTAGACCACCGGCCACACACGGAAGCCAAGGCCACTTCAGATGTCCTGCTTGAGCATGTGTTCATGGTCCGGGTCGAGAGAGTAAAGGGTCTGATGCCTCTGCAGTCCACAGTATGGGGTGAAGCCGACTGCTATATCCAGTACTCTTTTCCTGCCCAGAATGAGTCAAGAGAGGACATGGACACACATGCTGTCGAGAGCCACGTGGACTTGAAAGCGTTCCGCTCTGAGACCACTCTCTGTGTGCCCGACCCTGTGTTTGGACACAATGAGACTCACGTCCTGCTGGCTCCGCCTGACGTCCCAGTGCAAAAGCTACTGCTAAACTCACTGGCCCATCAGGGACTGAGGGGTGGAGGAGGAGTGCAGTTTGAAGTTTGGTGCAGgTATTATTACCCAAACGTTCGAGATCAGCTTGTAGCCAGAGGACTGCTGCCCATGTCCAAGCTGTGTGCCATGGTGACTATGCAGAAACAGGGCCAGACAGAGGCACAACATTTCTCCCTTCCTCTGATACCAAGAACCGACCGGCCTGTAGATGCGCAACCCCAGCCACCTGGGCTGCTTGAAGTGACCGTTCAGTACAAGTCTCGACCAATGAGGAGTGTGGGACTGAAGAGTGGTGTCGTTCCCTCCCGCAGAGTAACACTGGTTGTGCAGATTCATAGAGCCGCTGGACTGCAAGCTGCAGCCAAagcTCTTGCAGACTCAGACAGCTCGCTGGACTATTACTCTAAAGTGGGCCTGAACTCATTCATCACTGTGCAGCTCTCCTTCTTGCCGGACAGTGAGTCTCGTAGCACACGTGTGGCAGCCAGGAGCTTCTGCCCAGAGTTTGAGCATCACACTGAGTTCTGCTGTAACCTGCTGGTGCAGAGAGACAGTGGAGAGAGCGTCAGTCTGGCTGAACTTCTGCAGGATGCTGTGGCTATCTTCACCGTCTTCAACAGAGACACACGCAAAATGGTTGATACAAGATCGAAGGACATTGTCTTGGGAACCGTGAAAATTAAGCTTGCAGATCTGATTCATAAAAGAAGTGGCATATCTGGCTGGTACAGTCTCTCTCATCCTCAgagcacatcatcatcatcatcatctcacgGTCTGACTTCGGCTGGAGGCCTTGAAATCTCCATTAGTTTCTCCCATCATGCAGACAGAGAGCGAGTCCTCAGTTCAGCTTGTGGTCTTGGATGGGACATAGAGGAACACAGTGAAGACGAGGCCAGCACTGAGGATGAGGATGCTTTAGAAGCGCACTCAAAGTCTCTAACATTTTCCATTTCAATGCCCAGAGCATGGCTGCCCATTCATTGCCTGCTGCTGCCTGGACATGAAGACCTACAGCGATCCACCTACTGCTACTACAGATACAAACTATATGAGCAGCACACATTCAGTTCTGAGCTCAGACACCCCGTCGCAGACAAGAACCATGGAGACGAGGGATTGGCCACAGTGGCATTTCAGGGGAGCAGAAGTGTGATCTTGAGGAGGACTCGACCCCTGCACTGGTACCTGAGGGAGGAGAAGCTGGAGGTGCAGCTGTGGGTCACTTTTGGGAAGGAGAAGAGGGTCCGACCGCATAATGCAGACCGTCTAGTGGGCTCTGCTTTTGTGGATCTCTCTGCTCTTGCTGGAAGCTTGAAGCAACATCAGACTATCAGTGGTGTATATCCGTTGTTCAAGCGCTCAGCAGTAAACCTGTGTGGGGCTGCTCTCAGAGTCCACATCACCGTAACCACAGACTCTCTCACCCTTGAGCCTCAAGTCATTGAGCAACTCCACAGCTCAGGAGAAGAAGACCTGAATGAAGACCTCGCCACCACATCTCCGTCTAGACCTCAATCCCCTAGCAAACCACTTATCCAATCAGAAGTGACCACTGAGGATCCGCCATCCACACAACCCATTGAGAACACCTTCATCGCCAACATCACCGTGGACAGAGCCATGCATCTCAGTCTGAAGGGTTGTCCTCTGGCTGAAAGAGGGGGAGGGTTGCCAAGTTGTTGTGTTTCTTATGCCACTGCTGATGACACGGGTACAGTGACCACAGCGCTGATTAAAGACAATGAATGTCCTGTGTGGGACCACCAGCAGGAGTGCAGACTGTCAAAAGAGCTACTCTTGGATCCCCAGCAGTGCTTGGTTTTTAAAGTTTGGCATAAAGGAGAGGTGGAGCGGGTGATTGGGTTTGTGTCTGTTGACCTGTCACCTCTTCTGTCGGGATTCCAGTCAGTTTGCGGCTGGTACAACATCACTGATTTCAGCGGGCAGTGCCAGGGGCAGTTAAAAGTGTCTGTGTCTCCTCTGAGAGCAGTGCAAGAGCTGCGGGCACATAGACAGATGGCACAGGACACTCATGCTCCAGACTCCAGTGCTTTCTTTAGTGCACTTCCACTTTGCTATCAAACTTCAGCCACATACAGCAACTTCCCCAGTCACATCAGTCGGTTCTCAGAGCAGAGGATCAGCACTCCTCCCGAGCACTTAGAAAGACTGCTCTCGGACAgGTCAAGTGTGACAGATCGTCACGATGAGCACATGGACAATGTAAGATTGTTCCATCAGAGTTTGCATGAGGGAGAGAAAGCATCTTATTCCTCCACGGTTGCAGATTCACATCCATCCAGTTCAACACTTTTCTCTGCTCTCAGGAAAAATCTTAGTGACCTAGATGATATTCAGAGGTATTTCAGCCGGAAGCTGTCCACTCCAACATTCCCAAAGCTGAGGGATCTGAGAGGAACCTCCAGACAGGAAGAGCACCGGGTCTCAGAGACGGACACCACACAACTGCTGCTGAAGTCCAACCAGCTGGTGGGAGAAGTCAACGACATCATCAAAGGTTTAAGTGAACATCAGCCTGAAGAAGCACCTGTTATCCTTAAAAGCACCACCACTACTCCTGATGTGGCTGATAAGCGTTTAACCTCTGGAGCTGATCAGCTGATTCTAACAGAGTCGTACAGCTGTGAGACAGAACCACACTTTCATAAACACTCTGACATGATGCTGGAGGATGAAAATGAAGTCTCGCCCTTCAGCTCTCCTGCTCCTACAGAGACCAGACACTCAGTAGCTGCTCcagaagatgaagaaaaaaacgATCACATCTccagtgatgatgatgaagataaagaCCAGGATGAGCATGTAGACTTTGAGGAAACTTTAATTCAGCCCAGAACATTAAATGAGGTCACTTCAGTCACAGACAGAACCAGCCCCTGGACCAGCTTGCTGTCTGACCCAGATATGAGCTCTCTAGAGAGTCTAGAGTCTGTGCACCGTCATTCTCAGGACCACAGCATCCACATTGGAGGAGAGCAGAGAAACAGAAGTGACAATAACCCACTAACTGCAGAATCCCAAGAGACTGATTCTGATTCAGATGTTTCAGAAAGATCTCCAACTGGTCAGGAGATGTTTAGGGGAGCTGGTGCTGTTGAAACAGAACAGCAGGTACAGCAGGCTTCTCCAGATGGTCTTGATGGAGATGATGCTCTTTCTAGTATCAGTGAGGCAGAGGATTGTGAGCTGAGCAACAGTGGGCCTGAAGAAGCGATTGAAAGGCCAATATCATCTCCCTCTGCAGAGTCTGCCTCAGAAGCAGATGACAAACATGATGAGAAGACAACCAAAATTTTGGAATCTGTTGATATTCCAAATTTCTTCCTGTCAACTCACCATCTGGAGGCGTCCATGAGGGCTTTGAGGATGGCGCCTGTTTTTCCAACAGCTGAGTCTGATACTGGAAATCCTGGAAATCCCTATCAAAGAAAGCCTCGCTCCAGGCCCAGCATCCCACCATCACAGAGGAGTGAAGAGACCAGAAGAATTGCTAAAATATTTGCTTCAAAGTTTACAGAAGAAACCAACAGTTGGACGCCACCAAAATCTTCTTACTCCTCTGAAGATGCTGTAACTGCAGACAAGTCCTTCAGATCAGGTCTTTtgtaggttatgaataaaatattattcaccccAGAGGGTCCCGAC

Function

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060503-104 Predicted to be involved in centriole elongation and cilium assembly. Predicted to be active in centriolar satellite and centriole. Human ortholog(s) of this gene implicated in orofaciodigital syndrome. Orthologous to human C2CD3 (C2 domain containing 3 centriole elongation regulator).

Ensembl:

ensembl_id ENSDART00000112974

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016777 lncRNA upstream 408080 14856196 ~ 14857945 (+) False XLOC_008373
TCONS_00016776 lncRNA upstream 410259 14854889 ~ 14855766 (+) False XLOC_008373
TCONS_00018910 lncRNA upstream 1016096 14249389 ~ 14249929 (+) True XLOC_008368
TCONS_00016763 lncRNA upstream 1124033 14141055 ~ 14141992 (+) False XLOC_008365
TCONS_00016760 lncRNA upstream 1212559 14045121 ~ 14053466 (+) True XLOC_008363
TCONS_00018912 lncRNA downstream 35874 15347642 ~ 15351457 (+) False XLOC_008379
TCONS_00018911 lncRNA downstream 35874 15347642 ~ 15351457 (+) True XLOC_008379
TCONS_00016790 lncRNA downstream 79133 15390901 ~ 15394658 (+) False XLOC_008381
TCONS_00018764 lncRNA downstream 139035 15450803 ~ 15452516 (+) True XLOC_008384
TCONS_00016799 lncRNA downstream 317738 15629506 ~ 15665686 (+) True XLOC_008388
TCONS_00016781 mRNA upstream 28814 15232855 ~ 15237211 (+) False XLOC_008376
TCONS_00016782 mRNA upstream 28890 15232914 ~ 15237135 (+) True XLOC_008376
TCONS_00016780 mRNA upstream 47069 15173611 ~ 15218956 (+) True XLOC_008375
TCONS_00016779 mRNA upstream 301784 14861335 ~ 14964241 (+) True XLOC_008374
TCONS_00016775 mRNA upstream 407836 14854666 ~ 14858189 (+) False XLOC_008373
TCONS_00016786 mRNA downstream 2421 15314189 ~ 15331501 (+) False XLOC_008378
TCONS_00016787 mRNA downstream 4558 15316326 ~ 15328206 (+) True XLOC_008378
TCONS_00016788 mRNA downstream 63839 15375607 ~ 15381879 (+) True XLOC_008380
TCONS_00016789 mRNA downstream 79114 15390882 ~ 15401917 (+) False XLOC_008381
TCONS_00016792 mRNA downstream 91792 15403560 ~ 15408113 (+) True XLOC_008382
TCONS_00016758 other upstream 1308175 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016757 other upstream 1741037 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016731 other upstream 3700516 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 5370039 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 5954547 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016791 other downstream 82474 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 1207199 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 1517994 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016824 other downstream 1788709 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016835 other downstream 2062021 17373789 ~ 17373915 (+) True XLOC_008411

Expression Profile

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