RNA id: TCONS_00018911


Basic Information

Item Value
RNA id TCONS_00018911
length 3695
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_008379
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15347642 ~ 15351457 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCGACAGACATAAGCCTACATTATTGtcaaaaaactatttatatggaATATATTGATGTTCTAGGGTTTAGTTTTTTCAATGGAAAGGCAGAAttctatcagattttttttatgattCTTGTTCCTTGGGATGACATGAGGGTGGATAAATGATGAAGGTCTGAGATGAGTAAACCCTTTAAAGAGATAGTTGAAATTAAAAATCTGTTACTCACCATTTCCAAAACTGttggtttctttgttttgtttaacactaaacatactttgaagaaagctggaaacctgtaacatggacttccatagcatttgttttcttACAATGGATTGAAATAGTTGCAAGTTTTCAAGTTtcttgaaaatatttttgtgcttaataaaacaaagaaagcaACAGTTTTGGAAAAACTGAAGGGTGAGTAACAGATTTTTCATTTCAGAAGGAACCCagtaggcacacaacatcataagttGCTAATATTAGGTTCGATTTAGATCATggcgtcaggtgaccaaaattcagtgtcaagccaacatctaaggacaacgttattttgttGTTTGATAAAGATGTCAAGTTACGTTggtatttagttgattttaggttgtgtttgatAGTGACCAAATGTCTGATCCAATGTCTGTTAGATGTCATTGTgctaacgtccacacaacgtcagggtgtaacatgattagacgttgatatggTTTGATTTTaagttgactttaggttgtgcattgacatcggcctgacgttgggttctgatgtcaacccaattttcatttccaaacaaaacccAACATctccacgacattggggtacgtttgggtacaacatcaatatgatCTCATGTTactgtcctgtgcctgcagggaagaAACTCATAATCACTTGAGAGTTAGTAAATGTGTACAAATATTCAGATAAACTATGTCTTAAAGATTGGTTGGCAAGGCATAATGATTGCAACAAATATcaataattgattaaatattgcaaatattgaGCTAACTATAGTGTAACTCTTAATTTGAAGTAATTATGACATCGAGTATTCGATAAAAGAACAATACACACCACCAGCATTGACATAATGCATCTATGACTACTTgggttcttttttttctgtctttttattgttataattattttggCTCTTGTGCAACTGCTACATAGTTATTCACATTCAAGATACTGTCACTCAGGATAcagctaaaagtaaaaaaaaggaagtaaaaggaaaaaaaaaaggcaaataaatgaatttaaaaatactGCCAAAGACAATTTTATGGTCCATGTTCTGAAACACTGATTCGGTAACGTCACTGTTGTTTAAACCACACGTTCAATGTGCATAATAGGACAAAAAGAACACTCGTATATGGTTCAGAGAGCAAAACGTCGCTTAACAAATGTCATCATGGTTACAATTTACCAAGAAAAACACCGGTACATTTAAGTGATCAGTAGTGTTTTCCAAAAGTCAGCCTAGCTAAAGAAAAAACATTCCATGTCACAACGCCCATAACAGATCGATTTATTGTTAACAATCACAATTTTGGAATAGCAAATCAAAACGAAATCTTGatcaattataaataaacaatatgaaGCCAGTTTACTTTTCAATTATAGGAATACATAACATCCAAGATATAAGTTAATAAAGTCAAGCTATTGTATAAATACATCACCAGCATGCACAATATTGAATCGATAGTATTGTTGTAATTATCTTACACTGACAAAACAGTATACTTGGCaagtgcaaaaataaattaaacacagAAGTAAACCACAAACTTTGAAGCTGCAATATTTTTTCCTATTTTCTtttcgttatttttttttttttaaataaccaggTCATTCTCTGCCTTTCCCCCAACCGGTCCTTCAAAATAACTGAATGGTTCCGATAGTATCAAGCTGTGAAGATTGTGATGAACTTGAAATTCATTTAGGTGCATTCAACCAATACAAATTCTTCCATTTAATATCCAAATAAATCGAGCTAATACTATGGAACCATTAAAACCATTTTTACCCATAGAACGCCACCTAAACGCTTCTTTTGAATTGCTTTTCAACTCAAAACGTAAATAAGCAGCATCCCTTTAAGAAATACATCAGTCCATATGCCAGTGTGAGGCTGCCATTCCCAACCAACAACAACAAGGACCGCTTCCGGCTGATTGACTGACATTTCAGTGGTTTTGGCAAATGTCAAAGAGAACCAAGAAGAGGGAGGCccattcaactatatatatatttctgtatatATTCAAACTAGGACTTCAGCCCCCCCTTTTTACCACccttgatatttttttcttttaactcgTGGAAAAATAAAGAACTGCTGCTGCAGAGGAAACCATGGCAAAAGCTGCTGCCAAAGTCCACCAGCCGTTTTGTATGTTTCTAGATAGAGAGGTCATCTGGCGCTTAATTGTTGCCCTCTCCGCCTTCGCCGTCTTGGCCAGATGGCAGGCCTGCTCCGGAGCGTTCTGGATCTCGTAGTAGAAGACAGAGTAATTGAGGGCCAACCCAAGCCGGATGGGGTGAGTGGGCTGCATGTGCTCCTTGCTGATCTCGTGAGCCTCGTTGTAGGACTTCTCGGAGGACTCAACCACGGTGGATCGCTTCTCGCCCGTAGCCACCTCAGCCAGGTAGCGGTAATAATCTCCCTTCATCTTCAGGTAGAAGACCTTGCTCTCGTGCTGGGTCTCACTGCAGTTCTTGATCAGGAAGTTATCCAACAGGTTGAGGACGTCCTGGCACACGGCCTCCAGCTCCTTCTCGATCTTTTCCCGGTAGGCCCTCACCATCTCGATCTTCTTCTCGTTGCCGTCTGCCGAGGTCTTCTGCTCGATGCTGGAGATCACCCTCCAGGACGAGCGGCGAGCGCCTACGACGTTCTTGTACGCCACTGACAAGAGGTTCCTCTCCTCGTTGGACAGGGCCTCATTGAGCTCGGTTACCTGCGAAGGAAGAAGACAGAACGCTGGTTGAGGGAAGACACACACAACAGGAatcaaccaacagtatctgaggttttcgctaaaattactaagtacaagcacgAAAGCGAAAGACTGAAGAAGTGTACTAACACTGTGTCACGCTACCTGATAGataaaaagacagaagagtcattggttagagacaagattaattaaacatcacatttaacaactataatgagacgcgatccagcggtacatccttgataaactgtctgacatgcactgctctccggggttttgtgctcaaagcatcCACTGACCGTTGGAGCTCAGACGCGCACATacgctgcagcgcatgacagagtgtgtatgtgtgtggtcacgttatgtgcgttttcagcagacggagggctgttcagaaatgccaGTTGAAACGCCATGGGtgacgtggatcattttcgttctaaaatgccattttaaaacaaagacatattaatGTAAACTGGGCtatgtgtatttttcgcgagcgggttgctGTTGCATCTgtggcggggcggaggatcgcgaccCAACCCTACCCCCAGGACATTATTTTGTTTCTCAAAACATGTggcattatttgttttaattcttgGTTTTTCTGTGAAAACACAGCAAcaattttggtttgtttttatggcaaaaaatcctggagggactAAGTTTTTCATGGGTTATTAGTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016777 lncRNA upstream 489697 14856196 ~ 14857945 (+) False XLOC_008373
TCONS_00016776 lncRNA upstream 491876 14854889 ~ 14855766 (+) False XLOC_008373
TCONS_00018910 lncRNA upstream 1097713 14249389 ~ 14249929 (+) True XLOC_008368
TCONS_00016763 lncRNA upstream 1205650 14141055 ~ 14141992 (+) False XLOC_008365
TCONS_00016760 lncRNA upstream 1294176 14045121 ~ 14053466 (+) True XLOC_008363
TCONS_00016790 lncRNA downstream 39444 15390901 ~ 15394658 (+) False XLOC_008381
TCONS_00018764 lncRNA downstream 99346 15450803 ~ 15452516 (+) True XLOC_008384
TCONS_00016799 lncRNA downstream 278049 15629506 ~ 15665686 (+) True XLOC_008388
TCONS_00018765 lncRNA downstream 422421 15773878 ~ 15775157 (+) True XLOC_008389
TCONS_00018913 lncRNA downstream 427531 15778988 ~ 15782552 (+) False XLOC_008390
TCONS_00016786 mRNA upstream 16141 15314189 ~ 15331501 (+) False XLOC_008378
TCONS_00016787 mRNA upstream 19436 15316326 ~ 15328206 (+) True XLOC_008378
TCONS_00016785 mRNA upstream 35874 15266025 ~ 15311768 (+) False XLOC_008377
TCONS_00016784 mRNA upstream 35874 15266025 ~ 15311768 (+) True XLOC_008377
TCONS_00016783 mRNA upstream 46215 15258758 ~ 15301427 (+) False XLOC_008377
TCONS_00016788 mRNA downstream 24150 15375607 ~ 15381879 (+) True XLOC_008380
TCONS_00016789 mRNA downstream 39425 15390882 ~ 15401917 (+) False XLOC_008381
TCONS_00016792 mRNA downstream 52103 15403560 ~ 15408113 (+) True XLOC_008382
TCONS_00016793 mRNA downstream 64166 15415623 ~ 15437530 (+) True XLOC_008383
TCONS_00016794 mRNA downstream 105079 15456536 ~ 15460133 (+) False XLOC_008385
TCONS_00016758 other upstream 1389792 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016757 other upstream 1822654 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016731 other upstream 3782133 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 5451656 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 6036164 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016791 other downstream 42785 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 1167510 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 1478305 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016824 other downstream 1749020 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016835 other downstream 2022332 17373789 ~ 17373915 (+) True XLOC_008411

Expression Profile

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