RNA id: TU271447


Basic Information

Item Value
RNA id TU271447
length 236
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G239237
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 2748239 ~ 2748474 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGAAGACAAACAGGCACCGTTGAGAGAGGTGAACACTGCTTGCCTCCGGAGGGGACCACCCTCAGGATCCTGACGCTGCTGGCGTCAGGATTTCTTTGCCGAAGCCCTCTTAGCCGCAATGACAGCCCTCAGATCTGTCTTGCCTTTGTAGGACTTCGGCTGAGAGTGTTGCCCCGCCTCCCAGCTCCTCGGAGGGGGAGCACGGGTAGCAACGCTCTGCTTCTGTTGTTGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271443 lncRNA upstream 2423 2745080 ~ 2745816 (+) False G239235
TU271440 lncRNA upstream 2574 2745339 ~ 2745665 (+) True G239235
TU271432 lncRNA upstream 30845 2717117 ~ 2717394 (+) True G239228
TU271376 lncRNA upstream 140703 2606642 ~ 2607536 (+) True CI01000055_02601849_02607123
TU271375 lncRNA upstream 140804 2606642 ~ 2607435 (+) False CI01000055_02601849_02607123
TU271448 lncRNA downstream 83 2748557 ~ 2748883 (+) True G239238
TU271449 lncRNA downstream 691 2749165 ~ 2749377 (+) True G239239
TU271470 lncRNA downstream 95207 2843681 ~ 2844696 (+) True G239256
TU271473 lncRNA downstream 131582 2880056 ~ 2880617 (+) True G239257
TU271489 lncRNA downstream 154334 2902808 ~ 2903457 (+) True G239273
CI01000055_02729512_02734190.mRNA mRNA upstream 13467 2729512 ~ 2734772 (+) True CI01000055_02729512_02734190
CI01000055_02646852_02680018.mRNA mRNA upstream 68202 2644350 ~ 2680037 (+) True CI01000055_02646852_02680018
CI01000055_02608904_02621376.mRNA mRNA upstream 126777 2608904 ~ 2621462 (+) True CI01000055_02608904_02621376
CI01000055_02601849_02607123.mRNA mRNA upstream 140931 2600730 ~ 2607308 (+) False CI01000055_02601849_02607123
CI01000055_02542526_02542861.mRNA mRNA upstream 205329 2542216 ~ 2542910 (+) False CI01000055_02542526_02542861
CI01000055_02760466_02767918.mRNA mRNA downstream 11637 2760111 ~ 2767934 (+) True CI01000055_02760466_02767918
CI01000055_02808336_02822398.mRNA mRNA downstream 59862 2808336 ~ 2822782 (+) True CI01000055_02808336_02822398
CI01000055_02852816_02861925.mRNA mRNA downstream 104342 2852816 ~ 2862645 (+) False CI01000055_02852816_02861925
CI01000055_02883892_02885021.mRNA mRNA downstream 135289 2883763 ~ 2885369 (+) True CI01000055_02883892_02885021
CI01000055_02886631_02891978.mRNA mRNA downstream 138157 2886631 ~ 2892053 (+) True CI01000055_02886631_02891978
TU271353 other upstream 204121 2541122 ~ 2541235 (+) True G239173
TU271351 other upstream 204121 2541201 ~ 2541235 (+) True G239173
TU270647 other upstream 1078995 1668410 ~ 1669244 (+) True G238534
TU269823 other upstream 2328307 418925 ~ 419932 (+) True G237840
TU269631 other upstream 2727077 20902 ~ 21162 (+) True G237680
TU272036 other downstream 1413776 4162250 ~ 4213402 (+) True G239761
TU272029 other downstream 1505736 4254210 ~ 4255092 (+) True G239755
TU272088 other downstream 1515553 4264027 ~ 4264066 (+) True G239802
TU272472 other downstream 2417018 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 2788044 5536518 ~ 5543812 (+) True G240099

Expression Profile