Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU271489 |
| length | 650 |
| lncRNA type | inter_gene |
| GC content | 0.30 |
| exon number | 1 |
| gene id | G239273 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000055 |
| NCBI id | null |
| chromosome length | 6774723 |
| location | 2902808 ~ 2903457 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU271473 | lncRNA | upstream | 22191 | 2880056 ~ 2880617 (+) | True | G239257 |
| TU271470 | lncRNA | upstream | 46540 | 2843681 ~ 2844696 (+) | True | G239256 |
| TU271449 | lncRNA | upstream | 153431 | 2749165 ~ 2749377 (+) | True | G239239 |
| TU271448 | lncRNA | upstream | 153925 | 2748557 ~ 2748883 (+) | True | G239238 |
| TU271447 | lncRNA | upstream | 154334 | 2748239 ~ 2748474 (+) | True | G239237 |
| TU271505 | lncRNA | downstream | 24476 | 2927933 ~ 2928136 (+) | True | G239289 |
| TU271506 | lncRNA | downstream | 25665 | 2929122 ~ 2929377 (+) | True | G239290 |
| TU271508 | lncRNA | downstream | 28357 | 2931814 ~ 2932097 (+) | True | G239292 |
| TU271509 | lncRNA | downstream | 28745 | 2932202 ~ 2932436 (+) | True | G239293 |
| TU271512 | lncRNA | downstream | 30894 | 2934351 ~ 2934759 (+) | True | G239296 |
| CI01000055_02892577_02901154.mRNA | mRNA | upstream | 982 | 2892475 ~ 2901826 (+) | True | CI01000055_02892577_02901154 |
| CI01000055_02886631_02891978.mRNA | mRNA | upstream | 10755 | 2886631 ~ 2892053 (+) | True | CI01000055_02886631_02891978 |
| CI01000055_02883892_02885021.mRNA | mRNA | upstream | 17439 | 2883763 ~ 2885369 (+) | True | CI01000055_02883892_02885021 |
| CI01000055_02852816_02861925.mRNA | mRNA | upstream | 40163 | 2852816 ~ 2862645 (+) | False | CI01000055_02852816_02861925 |
| CI01000055_02808336_02822398.mRNA | mRNA | upstream | 80026 | 2808336 ~ 2822782 (+) | True | CI01000055_02808336_02822398 |
| CI01000055_03194041_03223541.mRNA | mRNA | downstream | 289580 | 3193037 ~ 3223561 (+) | True | CI01000055_03194041_03223541 |
| CI01000055_03392185_03445744.mRNA | mRNA | downstream | 488728 | 3392185 ~ 3446689 (+) | False | CI01000055_03392185_03445744 |
| CI01000055_03453919_03456503.mRNA | mRNA | downstream | 549873 | 3453330 ~ 3456648 (+) | True | CI01000055_03453919_03456503 |
| CI01000055_03471384_03476628.mRNA | mRNA | downstream | 567297 | 3470754 ~ 3476855 (+) | True | CI01000055_03471384_03476628 |
| CI01000055_03482922_03497329.mRNA | mRNA | downstream | 578985 | 3482442 ~ 3497616 (+) | True | CI01000055_03482922_03497329 |
| TU271353 | other | upstream | 358690 | 2541122 ~ 2541235 (+) | True | G239173 |
| TU271351 | other | upstream | 358690 | 2541201 ~ 2541235 (+) | True | G239173 |
| TU270647 | other | upstream | 1233564 | 1668410 ~ 1669244 (+) | True | G238534 |
| TU269823 | other | upstream | 2482876 | 418925 ~ 419932 (+) | True | G237840 |
| TU269631 | other | upstream | 2881646 | 20902 ~ 21162 (+) | True | G237680 |
| TU272036 | other | downstream | 1258793 | 4162250 ~ 4213402 (+) | True | G239761 |
| TU272029 | other | downstream | 1350753 | 4254210 ~ 4255092 (+) | True | G239755 |
| TU272088 | other | downstream | 1360570 | 4264027 ~ 4264066 (+) | True | G239802 |
| TU272472 | other | downstream | 2262035 | 5165492 ~ 5166647 (+) | True | CI01000055_05163240_05166231 |
| TU272428 | other | downstream | 2633061 | 5536518 ~ 5543812 (+) | True | G240099 |
