RNA id: TU271744



Basic Information


Item Value
RNA id TU271744
length 205
lncRNA type intronic
GC content 0.37
exon number 2
gene id G239509
representative True

Chromosome Information


Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3306896 ~ 3307174 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTCACACTCTATGCTTTTGATTTACTAAAAAGACGAACCAACTCATAAGAGTCATTTGTTAAACAATCGGACATTGTTGGTCACACTATATTTTCGATTCACTAAAAAGAACCAACTCATGAGAGTCACATGTTCAGGAATCGGACTACACAGGTCAAACTCTATGTTTCTGATTCACCAAAAAGAACCAACTCGTGAGTCACTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU271689 lncRNA upstream 68699 3237988 ~ 3238197 (+) True G239457
TU271660 lncRNA upstream 164750 3141923 ~ 3142146 (+) True G239430
TU271656 lncRNA upstream 171480 3135192 ~ 3135416 (+) True G239426
TU271655 lncRNA upstream 173031 3133642 ~ 3133865 (+) True G239425
TU271654 lncRNA upstream 174051 3132596 ~ 3132845 (+) True G239424
TU271733 lncRNA downstream 9740 3316914 ~ 3317371 (+) False G239499
TU271734 lncRNA downstream 9740 3316914 ~ 3319460 (+) True G239499
TU271761 lncRNA downstream 40094 3347268 ~ 3347536 (+) True G239526
TU271573 lncRNA downstream 46468 3353642 ~ 3353815 (+) False G239347
TU271569 lncRNA downstream 71753 3378927 ~ 3379463 (+) False G239347
CI01000055_03194041_03223541.mRNA mRNA upstream 83335 3193037 ~ 3223561 (+) True CI01000055_03194041_03223541
CI01000055_02892577_02901154.mRNA mRNA upstream 405070 2892475 ~ 2901826 (+) True CI01000055_02892577_02901154
CI01000055_02886631_02891978.mRNA mRNA upstream 414843 2886631 ~ 2892053 (+) True CI01000055_02886631_02891978
CI01000055_02883892_02885021.mRNA mRNA upstream 421527 2883763 ~ 2885369 (+) True CI01000055_02883892_02885021
CI01000055_02852816_02861925.mRNA mRNA upstream 444251 2852816 ~ 2862645 (+) False CI01000055_02852816_02861925
CI01000055_03392185_03445744.mRNA mRNA downstream 85011 3392185 ~ 3446689 (+) False CI01000055_03392185_03445744
CI01000055_03453919_03456503.mRNA mRNA downstream 146156 3453330 ~ 3456648 (+) True CI01000055_03453919_03456503
CI01000055_03471384_03476628.mRNA mRNA downstream 163580 3470754 ~ 3476855 (+) True CI01000055_03471384_03476628
CI01000055_03482922_03497329.mRNA mRNA downstream 175268 3482442 ~ 3497616 (+) True CI01000055_03482922_03497329
CI01000055_03532706_03537026.mRNA mRNA downstream 224200 3531374 ~ 3537194 (+) True CI01000055_03532706_03537026
TU271353 other upstream 762778 2541122 ~ 2541235 (+) True G239173
TU271351 other upstream 762778 2541201 ~ 2541235 (+) True G239173
TU270647 other upstream 1637652 1668410 ~ 1669244 (+) True G238534
TU269823 other upstream 2886964 418925 ~ 419932 (+) True G237840
TU269631 other upstream 3285734 20902 ~ 21162 (+) True G237680
TU272036 other downstream 855076 4162250 ~ 4213402 (+) True G239761
TU272029 other downstream 947036 4254210 ~ 4255092 (+) True G239755
TU272088 other downstream 956853 4264027 ~ 4264066 (+) True G239802
TU272472 other downstream 1858318 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 2229344 5536518 ~ 5543812 (+) True G240099

Expression Profile