RNA id: TU271771


Basic Information

Item Value
RNA id TU271771
length 507
lncRNA type read_through
GC content 0.49
exon number 5
gene id G239535
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3509117 ~ 3518130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATTTTCTTCATCTTTTTCTTCAGCTCCTCCTTGCCCTTGTAGGAGTCTAGACTGATTTCCAGTTTGGGTGTGGAACCAAACTGAACCACGCCAACTTTCACCTTGCCTGGGCTGACATCGAGAGCCTCACACAGCTTCAACATGTAGTGCCGGGATCGTTCGAATCCTCCTTTCCCAACACTGTAGGAGCTGTCCATCACAAAGAGAACATCCATCGCTGCAGAGCACTGCATCATTTCTCCAGCAGCGTTGATTTTCATAATGGTTTCAAGATCTGTTTGCATTTCCTGCACAGAGAAAATGGACCAAACTTGGCCAAACAGGAGCATGAGAAGGAGATGCAGCCGGCTTCTAGAGGACATTTTTTGAGCCCTCTCCGTTCTGTTCTCAGCGCAGGTACTGAAGTGTCAGAGTTTCTCTGGAGCTGTAACTCAGAGGCTCAGGTCGTGCTGAACAGGAGAGGGTGCTCTGCTCTTCTACTTCCGTACCGAGTCTGACTTCATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271575 lncRNA upstream 112819 3379049 ~ 3379463 (+) True G239347
TU271569 lncRNA upstream 112963 3378927 ~ 3379463 (+) False G239347
TU271573 lncRNA upstream 114040 3353642 ~ 3353815 (+) False G239347
TU271761 lncRNA upstream 161581 3347268 ~ 3347536 (+) True G239526
TU271734 lncRNA upstream 189657 3316914 ~ 3319460 (+) True G239499
TU271782 lncRNA downstream 62771 3580901 ~ 3581110 (+) True G239546
TU271801 lncRNA downstream 106653 3624783 ~ 3625005 (+) True G239565
TU271840 lncRNA downstream 186894 3705024 ~ 3705225 (+) True G239598
TU271841 lncRNA downstream 189337 3707467 ~ 3708004 (+) True G239599
TU271899 lncRNA downstream 351602 3869732 ~ 3925859 (+) True G239646
CI01000055_03482922_03497329.mRNA mRNA upstream 11501 3482442 ~ 3497616 (+) True CI01000055_03482922_03497329
CI01000055_03471384_03476628.mRNA mRNA upstream 32262 3470754 ~ 3476855 (+) True CI01000055_03471384_03476628
CI01000055_03453919_03456503.mRNA mRNA upstream 52469 3453330 ~ 3456648 (+) True CI01000055_03453919_03456503
CI01000055_03392185_03445744.mRNA mRNA upstream 62428 3392185 ~ 3446689 (+) False CI01000055_03392185_03445744
CI01000055_03194041_03223541.mRNA mRNA upstream 285556 3193037 ~ 3223561 (+) True CI01000055_03194041_03223541
CI01000055_03532706_03537026.mRNA mRNA downstream 13244 3531374 ~ 3537194 (+) True CI01000055_03532706_03537026
CI01000055_03539420_03563869.mRNA mRNA downstream 21018 3539148 ~ 3563895 (+) True CI01000055_03539420_03563869
CI01000055_03604945_03612832.mRNA mRNA downstream 86815 3604945 ~ 3613140 (+) True CI01000055_03604945_03612832
CI01000055_03653282_03656353.mRNA mRNA downstream 135078 3653208 ~ 3656423 (+) True CI01000055_03653282_03656353
CI01000055_03667192_03685378.mRNA mRNA downstream 148606 3666736 ~ 3685893 (+) True CI01000055_03667192_03685378
TU271353 other upstream 964999 2541122 ~ 2541235 (+) True G239173
TU271351 other upstream 964999 2541201 ~ 2541235 (+) True G239173
TU270647 other upstream 1839873 1668410 ~ 1669244 (+) True G238534
TU269823 other upstream 3089185 418925 ~ 419932 (+) True G237840
TU269631 other upstream 3487955 20902 ~ 21162 (+) True G237680
TU272036 other downstream 644120 4162250 ~ 4213402 (+) True G239761
TU272029 other downstream 736080 4254210 ~ 4255092 (+) True G239755
TU272088 other downstream 745897 4264027 ~ 4264066 (+) True G239802
TU272472 other downstream 1647362 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 2018388 5536518 ~ 5543812 (+) True G240099

Expression Profile