RNA id: TU271801


Basic Information

Item Value
RNA id TU271801
length 223
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G239565
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3624783 ~ 3625005 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTTCATCATGAGTTTGTAATAAGAATTTAGTTGTGGAAACCATCAGTCATACGTGAATAAACTCATAGATGAGATATATTAGTACTTATAATGTGGTACATCAGAAATAAAAGATTACCATATTCAACTGGATGCACTTTACATTATTTTATAACATCAGATTATTTACCCATGAGCCATTTTTTATTTTTTAGTAGGAACAATTACATTTTTTGACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271782 lncRNA upstream 43673 3580901 ~ 3581110 (+) True G239546
TU271771 lncRNA upstream 106653 3509117 ~ 3518130 (+) True G239535
TU271575 lncRNA upstream 228485 3379049 ~ 3379463 (+) True G239347
TU271569 lncRNA upstream 228629 3378927 ~ 3379463 (+) False G239347
TU271573 lncRNA upstream 229706 3353642 ~ 3353815 (+) False G239347
TU271840 lncRNA downstream 80019 3705024 ~ 3705225 (+) True G239598
TU271841 lncRNA downstream 82462 3707467 ~ 3708004 (+) True G239599
TU271899 lncRNA downstream 244727 3869732 ~ 3925859 (+) True G239646
TU271891 lncRNA downstream 255361 3880366 ~ 3965963 (+) False G239643
TU271893 lncRNA downstream 255361 3880366 ~ 3965963 (+) False G239643
CI01000055_03604945_03612832.mRNA mRNA upstream 11643 3604945 ~ 3613140 (+) True CI01000055_03604945_03612832
CI01000055_03539420_03563869.mRNA mRNA upstream 60888 3539148 ~ 3563895 (+) True CI01000055_03539420_03563869
CI01000055_03532706_03537026.mRNA mRNA upstream 87589 3531374 ~ 3537194 (+) True CI01000055_03532706_03537026
CI01000055_03482922_03497329.mRNA mRNA upstream 127167 3482442 ~ 3497616 (+) True CI01000055_03482922_03497329
CI01000055_03471384_03476628.mRNA mRNA upstream 147928 3470754 ~ 3476855 (+) True CI01000055_03471384_03476628
CI01000055_03653282_03656353.mRNA mRNA downstream 28203 3653208 ~ 3656423 (+) True CI01000055_03653282_03656353
CI01000055_03667192_03685378.mRNA mRNA downstream 41731 3666736 ~ 3685893 (+) True CI01000055_03667192_03685378
CI01000055_03717618_03733174.mRNA mRNA downstream 91048 3716053 ~ 3733597 (+) True CI01000055_03717618_03733174
CI01000055_03745295_03748598.mRNA mRNA downstream 118480 3743485 ~ 3749226 (+) True CI01000055_03745295_03748598
CI01000055_03752947_03764493.mRNA mRNA downstream 127942 3752947 ~ 3765045 (+) True CI01000055_03752947_03764493
TU271353 other upstream 1080665 2541122 ~ 2541235 (+) True G239173
TU271351 other upstream 1080665 2541201 ~ 2541235 (+) True G239173
TU270647 other upstream 1955539 1668410 ~ 1669244 (+) True G238534
TU269823 other upstream 3204851 418925 ~ 419932 (+) True G237840
TU269631 other upstream 3603621 20902 ~ 21162 (+) True G237680
TU272036 other downstream 537245 4162250 ~ 4213402 (+) True G239761
TU272029 other downstream 629205 4254210 ~ 4255092 (+) True G239755
TU272088 other downstream 639022 4264027 ~ 4264066 (+) True G239802
TU272472 other downstream 1540487 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 1911513 5536518 ~ 5543812 (+) True G240099

Expression Profile