RNA id: TU271841


Basic Information

Item Value
RNA id TU271841
length 316
lncRNA type inter_gene
GC content 0.28
exon number 2
gene id G239599
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3707467 ~ 3708004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAATTAACCATATTGAGCCTTAAAAATTAAGAAAAGAAAAGTTTGTTAAGAATTAGAATCTAAAAGGATATTAAGATATCTGTAATATGAGTTACAGAAATGCAAACTTTGGGCAAAAAACACAAGAAGTGCTTTTTGCCATTTTTAAACTGTTGGCATATAATGCAACAAAGATTGCTAATGTCAACAGATTTAACTAACAGGCCTACCAATCTCTGTGTAAAAATAAAATAATTTCTGAAATTTGGTTGATTTTGACACGAAATTACCCAAATGTGTTTATGTCTGAGAACCTTTTATACATCTTTTATACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271840 lncRNA upstream 2242 3705024 ~ 3705225 (+) True G239598
TU271801 lncRNA upstream 82462 3624783 ~ 3625005 (+) True G239565
TU271782 lncRNA upstream 126357 3580901 ~ 3581110 (+) True G239546
TU271771 lncRNA upstream 189337 3509117 ~ 3518130 (+) True G239535
TU271575 lncRNA upstream 311169 3379049 ~ 3379463 (+) True G239347
TU271899 lncRNA downstream 161728 3869732 ~ 3925859 (+) True G239646
TU271891 lncRNA downstream 172362 3880366 ~ 3965963 (+) False G239643
TU271893 lncRNA downstream 172362 3880366 ~ 3965963 (+) False G239643
TU271895 lncRNA downstream 228538 3936542 ~ 3965963 (+) True G239643
TU272021 lncRNA downstream 418523 4126527 ~ 4127026 (+) True G239748
CI01000055_03667192_03685378.mRNA mRNA upstream 21574 3666736 ~ 3685893 (+) True CI01000055_03667192_03685378
CI01000055_03653282_03656353.mRNA mRNA upstream 51044 3653208 ~ 3656423 (+) True CI01000055_03653282_03656353
CI01000055_03604945_03612832.mRNA mRNA upstream 94327 3604945 ~ 3613140 (+) True CI01000055_03604945_03612832
CI01000055_03539420_03563869.mRNA mRNA upstream 143572 3539148 ~ 3563895 (+) True CI01000055_03539420_03563869
CI01000055_03532706_03537026.mRNA mRNA upstream 170273 3531374 ~ 3537194 (+) True CI01000055_03532706_03537026
CI01000055_03717618_03733174.mRNA mRNA downstream 8049 3716053 ~ 3733597 (+) True CI01000055_03717618_03733174
CI01000055_03745295_03748598.mRNA mRNA downstream 35481 3743485 ~ 3749226 (+) True CI01000055_03745295_03748598
CI01000055_03752947_03764493.mRNA mRNA downstream 44943 3752947 ~ 3765045 (+) True CI01000055_03752947_03764493
CI01000055_03795753_03805149.mRNA mRNA downstream 87699 3795703 ~ 3806779 (+) True CI01000055_03795753_03805149
CI01000055_03903278_03905608.mRNA mRNA downstream 195086 3903090 ~ 3905734 (+) True CI01000055_03903278_03905608
TU271353 other upstream 1163349 2541122 ~ 2541235 (+) True G239173
TU271351 other upstream 1163349 2541201 ~ 2541235 (+) True G239173
TU270647 other upstream 2038223 1668410 ~ 1669244 (+) True G238534
TU269823 other upstream 3287535 418925 ~ 419932 (+) True G237840
TU269631 other upstream 3686305 20902 ~ 21162 (+) True G237680
TU272036 other downstream 454246 4162250 ~ 4213402 (+) True G239761
TU272029 other downstream 546206 4254210 ~ 4255092 (+) True G239755
TU272088 other downstream 556023 4264027 ~ 4264066 (+) True G239802
TU272472 other downstream 1457488 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 1828514 5536518 ~ 5543812 (+) True G240099

Expression Profile