RNA id: TCONS_00018915


Basic Information

Item Value
RNA id TCONS_00018915
length 6052
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id XLOC_008393
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15987054 ~ 16018789 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGCATTAGGATCCATTCAGGAGACTTGAAGGATGCGGTCTCCCCACTGAGAGCGGCGGGTTTAGCTCGAGGCCAGTGAATCTGTGAGCCAGGTGTTTTTGCTCTTTCTTTGGACATGAGAGAGGCAAGTGACCCTGCCATGACCTACTTGCCGACAAATAGGCACACCTGATAAAGGTGCTGGCCAGCTGCTCAGTTCTACACTCATTAGATGCAGGCCTGCGAATGGAGGTCCCTAAAAGatgtaaatgcaaatgaaagtaTCTTTAGCGACTAGATCTTGATAAGAGGAGCTCATGCTGGCAGGAAGTTCAAGGCATCAGGTTCACCGCAGCTAGTGATGTGGCAGCGTGGGAAATTGGGCATGTGAAAGCGGTGACTGGAGACCGCATTTCAGGCTAGAGCGGTCACAGAGCGCAGGGGAAAAGGGAAGAGGCATAATTACTGAATACACTCCCGTCCATGGCAGGGGAGCTGAAGGAGCACGAGTGCTTTGATTAACAGTGAGGATAATTTCCTGACCTCTGTGCTAAACTGGACCAAAGAGTGACTTTGCATTCAGATTGAGGAAAGacagaaaggaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaacgagAAAGTTGGTTTCATCAATCAAGCCGTGCTCAGTCTGCGATCACGGGTGACTGATTGGTCAAGCTGTTCAAAGGAAATAGGAATTCTAAGGAGTTTACACATATTGGTTCGCTTCACTGATTGAGATGTACAACAAACCTAGCTAAACAAAAGACACTGAAGCAGTGAAAAACTCAACATCAGTCCTATCTAGCATACTCTAGAAATCTTATTCTGCTCACTTTGGAAGTGTCTTTCCACATAATCGTATCTCTGGAGCATTAATGAAGCCAAAAGGGCACCCCTGTTGTAGGACAAGCAGACAGACTCTACCACCCATTAAATAAACTAATCAGCCTGGCTACAGCAAGTCCATTTTGGTAAATAATTTGAATTACTGACCTGTTTGCTGGAGGACATTGAGCTCAGTGTACTGAGGCTGTTGGCGTCTGTCACCACCATGGCCGGGGGAAACCGAGACGAATGAGAATACTGGGGTGGCTCCTGCTTGTGTGGGTACACTGTAAAGATAACACAAACAGCAGTTTACATCTACAGCTTTATGATGTAGGCCTGACTAGATCAATAAATACTGAATAGAGGTAGTAGACTGACTGTGTGAGTGTGAGACGGAGGCCATGAAGGACTGTTGGCTCATGTGTCCAGATGACTGTTGCATGAGCTGCTGGTGTTGGCTATTTAACTGCTGAGAGAACTGCACTGGCTGCAGTGCTGCCAGACTGCCTGCAACACTGTTTATGACAGGCACCGTCTGTGCTTGCGATGTGTTCAAACCTGAATGCAAGAATATTACGACGTCAAGAGGAGAATGTATGAATAATCTGAAAAGGAAACCAAATATGGATGGACACTCACTTTGTGCAATGGCCATGACTCCAGAGAGTGGCATTATAAGGTTAGGGGTCTGTTGGTGCACATGGTGGGATGCGTGGATGTTGGTCAGGGTGCTTACTGGAGGAAGACCTCCACCTGATACCGAGATCTGTGAAGAAAATACACCACCAGTTCATCAGAATGACTAGAACGCTTCTGTCAGAATTGTACTCTTATCTTAAGAAAGTATCAGAGCCCTGACAGGAGGCACAGAGCTTTATTTGAATAGGCAGAGTTGAGAGGAGGCCATGCTCAGACAAACGTCTGACTGCTCAGATAAGCTGCTGTCATACTCCCTTCCTCCTACGCCAACTTCCAACTGGCTGTTGACAGAAACGCACCCTAGACCATGATGAATTTGACCTATAGTGTAACACTGCAGCCTTGCTAGAAAAATTAATGCACAGAAAATTGTCCTGAAACAAAAAGCTACATGAAGATCTCGCCCAACTCAAACATTAGTATTCAGATAAGCAACTCCATTGAGCGCCAGTGTCACTCAACCAACAGAGAACAAGCACAACTCCACCCTTCCTCTCCTCTGCGCGGCATTTAATCAATACAAACAGAATGTCTCTTTGTCAGGTTTGTTGGAACAGCCATGGCCGTGCCCCATTCTCACTACCACCAGCTAACATTTACTAAGATCAGCCCTGCAGTGCACTGTGGGCCAAGGCCTGCCGTCTAGCTTTGGGTTTAGCACTGGGAAGTACAATGCAGCAATTGTAAGCCCACTTGCTGGGTGAAGATATCTATCAAGCGCTACTTTGTGTTACTGTGTCAAGAGCAGACATAGTGTTATCTTATCAGTGTTGGAAGTGCTTACCATCTTGGCATCAGGTGACAGGAGGCTGTGACTGGGGTCCAGCGCCCCTGGAGAGACCTGCTGTAACACTGACTGGCTGGTTGACATGGCATTGCTGCTATGGTGATTGATCGTTGTTGAAGAACTGACTTCACCTGGACCTTGTTGGCTGTACCGGACACCTGTTGTAAAGGAAGGAAGAGAtaaattagttttagttttaatctTCTAACTGCTTTACAAAATGTGACCCAGCCAGTATTTGTTGGTCACTGACAAGTTTGGAAGAGCAAACAAACAAGGGCCTCTACATCTGGTGGCTGAACGGTCAAGGTCATCTCAATGTGTACACGTTAGCTGTCTGCAACTCTAAAAAACTATGTTGTGCTGAACTTCAGAACTTTGTTAAAATAATCTATATCAGTGCTGCACAATCCTGCTCCTGGAGGGCCCCCTTTCAGCAGAGTTTTTCTCCTGTCCCATTAGACCAagggtgttcaaactcggtcctggagggtcgatgtcctgcagattttgtctccaacttgtctcaacacacctgcaagaatgtttctagaaagcctagtaagagctcgattagctagcccaggtgtgtctgattaggttGGAACTatactttgcaggacaccggcccaccaggaccaagtttggacatccaTGCATTAAACACATTTGAACTAGAtagttttttttagaaatataagAAATTTCAAGCAAAGTGCATAGGAGCTGCATACTGCAGGAACATTCCTGATCTACATGAAATTAAGTTTTATGAGAGAATTATGTTCAACCTAAGCTGAATTCTcttttaggctatttattttgtTGGGTATTCTTGACTATTGAAGGCCACAGGAATCCAGCCTGTCTTCTATCGAATCGATGTTTGCCAACCCCACGCTCCACAGATATGAACAAGGTAAACATTTCTCAATTAAGGCTAATGTCAGACACATAGTTTCACTCCTACATTTAAATACTAGGTTTGTGCAGCCAAGCGAGATGATGACCCagccaaaataaatatttatcatttgttATGGGATTATTCCCTGAGCTTTTCTAAAAAAGCTAgtggcagcaaaaaaaaaaatgacagaaaagtcTAATCCCTCTGCTGAGTTTTGTTGTGTAGCGGAACTACAGATACAACCCCTTTGCACACTTAAAACATTGCCAGCTCTCTACAATGTCTTGTAAACGCCAGCTCAGGACAATAAAGCACTCCATTGGGCCTACAACCTGCTTGGCACACAATAGGCCAGCAACTATAAACAGTCTTTACTTTACTACCGCACAACCACTAAAAGTGTCAGGGAAAGAACAGACTATTGTCTGACTCTATCAGGCATTCACTCAGACTGCAGGGATCTCCTCTCACGTTCAATCATTCAGGTCTGTGCTGTCTGGGCCATGCTGACCAGCAGGAGGGCTCGGTTTCTGAGGAAACCAGAAACCGATGTACAACCTCTGAGAACGCGACATAAAAGTTACATGGAATGGCATCATAAACTAAGTCTTAATTACACTATTCAGTAAAGCAATGTGCACCATTCAGTGACCAATGCTAAAATTAGCGTCTTGACTAAGTATAGACAACAGTTACATATTGGCAAAAAATTTCAGCTTATCACTACTCAAAAATTTGTTTTCAGGTTTCATGATGCTTGTGGTAATCACACAATACAGTTTGACCTGTAAAAAAATGCTACCACAAAACTTGGTTAAAATGACAGAGGGTTGCGGGAAATGCTGAAGGGGAGTGGAAGCAGGAGGGTTCAACTGGTTTAAAGGGTTCAGCTCTCCCTGGGACACATGTAATATCAAAGCCTGGCTCTTCATCCCCAGGCAGTGCTCATTATAGCACTGCCGCATATGATAGGCCTCCTGGGTCTTAGCAGGACGTATGTGGCCTTTCAGCCTTTCTATTGCCCCCAACAGTCCAAAACAAGACAAGTTAAACTGTCCTGTCCTCTGCTTGTCCTTCACTATTATGTTCAGGGGtcatattgtttaattaatcattttagtttctcaaaaaatGATATAAGCTAGTTAAACAACCATTCTAACATGCCTAAACAGGATCAAAGACCATTTTGAAAGCAGTTTGCTTTCCAACAGGACGACAACACAAACATAGGGAAGACCACAACCAGCCCCCAAAACGCACATATCAGTTGACCTTCTAATGGCGGCGAACTGGCCTGTTTGTTATCAACAGGCCAAACCTGaatcaataaaaaaagttaaGTCTCTCACTGATGTGACCTGGTAACGACCTCTTTAACAAAACCCTGGTTTATGTAGTTTCCAAGAGGGGGCTGAGACAGGGAATCACCCAGTACTTTCTATACCTCGAGCAGAAGAAGAGACTCATCAGTCCTGTCTGGTCCAAAAAGAGCCAATAGTCCATCGGACAGCTCCTGCTGTTCTGCTCAGAGCACAGCCACTGCCTCTAAACCACAGCCCATAAAGGTGAGAGGGGCTTCGAGGTGTCCCTCCCCCTGGCCCAGCAGAGATAAATGAACCTTGGTTACAGTCACTACAGTCTTCTAATATGCCATAGACAAAAAGATTCCCTGCTGAGAGAAGGTAAAGAGAGCAGGGAAGAGGGGAGTCCCTTATCAAAGGACTGGGAGATGTAGTAGCAGAGGATTTTAATTGTCAATTAAGCATGCATAATACAGGCTGTGCCCTGGCAACGTGATGAGGGGTCCTGCTGTGCTATTATTTTCAGGCCAGCTTCTGACACCAAAAACAGCTGATGCTGCTGGCAGGCCACTGGCAGGACACCTTGTAAGTCCCTTGACTAAAAGCATGGAAGAGACCAACTCCATCCCGTTGCTCCCCCTTCTCAACCAAATTAACACACAACCTGAGGTCACTGACTGGTCAGGTGTGCAAAGGGAAACACCACACGCAAACAGACAAGCCACTCATTGCAGTGCTATATGCACAGAAACAAGCAACACACCCACAGAAAAAGAGCACTCTGACTCTTTAGCGCTCAGACATGAAAGAAACAGTAGGTAATAAGCTGGTCGGTCAAAGACTGTGTTGCTTTTACAGCCTAGTCTTGCCATATCAAACTAAGTCAATAAATCCTTCTGGGAATACAATTCATTAGATAACACAAGAGTGGGGCATGCAGTAAACCACAGTGACCCTACAGGTACAACTAGGCTTCGAGAGCGAGCTGAGCCACATGACCTGGGGTTGACCCTGTGTCCTGTCCAAGGGTGGCTGCTCTTTGTGTCTCACTCTTGCCTGCTGACTTCAGTGGAGCTGAGATTGCAGGTACAATGCAGATTGTTCTTGGTGTGTGTTTCAAAGCTGGGAATAACAATGCCATTTGCTCAGCTCACTCTGTCACTCTCATTGATCACTGCTCTCCTCTTTGCTTTCCCTCTGATCTCATCAACTATGTCAAGTCATCTTTAACTGGTGGAGTGATTATAATGGGGCTTGTGCTAATTATTCTTTCTAGACTAAACCGCAGAAAAGCCAAAGCTCAGTGATTTTATTTTCTGACTCAAAGCAACATTCAAAGGTTACCAGGAAGAATCAAATAACACATGTAAGCTCACAGTGAATGTATCAGTACCTTGCATCTTGCTTGGTGGGGAGCTGCTAGTTTGTGGGTGATGCGGGGAACTATGTGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018913 lncRNA upstream 204517 15778988 ~ 15782552 (+) False XLOC_008390
TCONS_00018765 lncRNA upstream 211912 15773878 ~ 15775157 (+) True XLOC_008389
TCONS_00016799 lncRNA upstream 321383 15629506 ~ 15665686 (+) True XLOC_008388
TCONS_00018764 lncRNA upstream 534553 15450803 ~ 15452516 (+) True XLOC_008384
TCONS_00016790 lncRNA upstream 592411 15390901 ~ 15394658 (+) False XLOC_008381
TCONS_00016805 lncRNA downstream 28568 16035869 ~ 16045504 (+) True XLOC_008394
TCONS_00016818 lncRNA downstream 907430 16914731 ~ 16920987 (+) True XLOC_008403
TCONS_00016834 lncRNA downstream 1362995 17370296 ~ 17372928 (+) True XLOC_008410
TCONS_00016836 lncRNA downstream 1369066 17376367 ~ 17378063 (+) True XLOC_008412
TCONS_00016839 lncRNA downstream 1412812 17420113 ~ 17423619 (+) True XLOC_008413
TCONS_00016804 mRNA upstream 109237 15856178 ~ 15877832 (+) True XLOC_008392
TCONS_00016803 mRNA upstream 167471 15786210 ~ 15819598 (+) True XLOC_008391
TCONS_00016802 mRNA upstream 167727 15786160 ~ 15819342 (+) False XLOC_008391
TCONS_00016801 mRNA upstream 204517 15779184 ~ 15782552 (+) True XLOC_008390
TCONS_00016800 mRNA upstream 211887 15771418 ~ 15775182 (+) False XLOC_008389
TCONS_00016806 mRNA downstream 177817 16185118 ~ 16192208 (+) True XLOC_008395
TCONS_00016807 mRNA downstream 335772 16343073 ~ 16371103 (+) True XLOC_008396
TCONS_00016808 mRNA downstream 379787 16387088 ~ 16407983 (+) True XLOC_008397
TCONS_00016810 mRNA downstream 514484 16521785 ~ 16546472 (+) False XLOC_008399
TCONS_00016811 mRNA downstream 517825 16525126 ~ 16533188 (+) False XLOC_008399
TCONS_00016791 other upstream 585429 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016758 other upstream 2029219 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016757 other upstream 2462081 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016731 other upstream 4421560 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 6091083 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016809 other downstream 511666 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 822461 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016824 other downstream 1093176 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016835 other downstream 1366488 17373789 ~ 17373915 (+) True XLOC_008411
TCONS_00016838 other downstream 1399669 17406970 ~ 17416607 (+) False XLOC_008413

Expression Profile

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