RNA id: TU272843


Basic Information

Item Value
RNA id TU272843
length 238
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G240444
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6135903 ~ 6136140 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCGTTTCCGCCATTTTGGGGTGAAAGCGAGTCGGCAGTCCACTAGTTTCTATGGCAATATCAGCTGCTTTGTTTAAAAAAAAACGTACATTAAAGCTGAAATCCAACCTGAATGATGACAACACAGAATAAAATACTATCACTAGTGATCATCAAATCCTTTTAACAGTTTATTTTACACACTTTGTGTTTAAGTCTTCCACTTTTTTCACAAAACCTTTGCTCTCTAGAAACCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272830 lncRNA upstream 12221 6120554 ~ 6123682 (+) True G240433
TU272829 lncRNA upstream 16119 6119544 ~ 6119784 (+) True G240432
TU272828 lncRNA upstream 16749 6118918 ~ 6119154 (+) True G240431
TU272825 lncRNA upstream 18735 6111988 ~ 6117168 (+) False G240429
TU272826 lncRNA upstream 20064 6111988 ~ 6115839 (+) True G240429
TU272849 lncRNA downstream 27221 6163361 ~ 6163671 (+) True G240450
TU272852 lncRNA downstream 63998 6200138 ~ 6200482 (+) True G240453
TU272717 lncRNA downstream 101845 6238643 ~ 6240167 (+) True CI01000055_06238643_06245138
TU272744 lncRNA downstream 195191 6331331 ~ 6333548 (+) True G240358
TU272888 lncRNA downstream 263853 6399993 ~ 6400807 (+) True G240472
CI01000055_06087070_06088629.mRNA mRNA upstream 47155 6087070 ~ 6088748 (+) False CI01000055_06087070_06088629
CI01000055_06076584_06085051.mRNA mRNA upstream 50234 6076584 ~ 6085669 (+) True CI01000055_06076584_06085051
CI01000055_06072755_06075308.mRNA mRNA upstream 60390 6072755 ~ 6075513 (+) True CI01000055_06072755_06075308
CI01000055_06054137_06069292.mRNA mRNA upstream 66437 6054137 ~ 6069466 (+) True CI01000055_06054137_06069292
CI01000055_05946358_05975922.mRNA mRNA upstream 159981 5946358 ~ 5975922 (+) True CI01000055_05946358_05975922
CI01000055_06143884_06145039.mRNA mRNA downstream 6645 6142785 ~ 6145423 (+) True CI01000055_06143884_06145039
CI01000055_06148933_06151962.mRNA mRNA downstream 12544 6148684 ~ 6152205 (+) True CI01000055_06148933_06151962
CI01000055_06154806_06161718.mRNA mRNA downstream 18666 6154806 ~ 6162076 (+) True CI01000055_06154806_06161718
CI01000055_06164325_06174472.mRNA mRNA downstream 28185 6164325 ~ 6174763 (+) False CI01000055_06164325_06174472
CI01000055_06177831_06186773.mRNA mRNA downstream 41691 6177831 ~ 6186773 (+) True CI01000055_06177831_06186773
TU272705 other upstream 47144 6086825 ~ 6086887 (+) True G240319
TU272586 other upstream 518312 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272585 other upstream 519550 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453
TU272428 other upstream 592091 5536518 ~ 5543812 (+) True G240099
TU272472 other upstream 969256 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272730 other downstream 27720 6163860 ~ 6164011 (+) True G240344
TU272693 other downstream 198184 6334892 ~ 6341165 (+) True G240308

Expression Profile