RNA id: TU272849


Basic Information

Item Value
RNA id TU272849
length 311
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G240450
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6163361 ~ 6163671 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAACCCCAAAATAATGACTTTTCAACAATATCTAGTGATGGCCGATTTCAAAACACTGCTTCGAAGCTTTATGAATCTTTTGTTTCGAATCAGTGGTTCGGATCGTGTATCAAACTGCCAAAGTCACGTGAACTATTGAAATTTCGAAACACTTATGATGTAACGAAGCCTCGTTTACTGAAATCACGTGACTTTGGTGCTCTGAACCACTGATTCGAAACAAAAGTTTTATCATATGTTTTAAATATGTTTTTAGTAGCTTTCTGGGCATTGAAAGTGTTAATTGTCTTGCTATCAATGGAGGCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272843 lncRNA upstream 27221 6135903 ~ 6136140 (+) True G240444
TU272830 lncRNA upstream 39679 6120554 ~ 6123682 (+) True G240433
TU272829 lncRNA upstream 43577 6119544 ~ 6119784 (+) True G240432
TU272828 lncRNA upstream 44207 6118918 ~ 6119154 (+) True G240431
TU272825 lncRNA upstream 46193 6111988 ~ 6117168 (+) False G240429
TU272852 lncRNA downstream 36467 6200138 ~ 6200482 (+) True G240453
TU272717 lncRNA downstream 74314 6238643 ~ 6240167 (+) True CI01000055_06238643_06245138
TU272744 lncRNA downstream 167660 6331331 ~ 6333548 (+) True G240358
TU272888 lncRNA downstream 236322 6399993 ~ 6400807 (+) True G240472
TU272890 lncRNA downstream 237630 6401301 ~ 6401914 (+) True G240473
CI01000055_06154806_06161718.mRNA mRNA upstream 1285 6154806 ~ 6162076 (+) True CI01000055_06154806_06161718
CI01000055_06148933_06151962.mRNA mRNA upstream 11156 6148684 ~ 6152205 (+) True CI01000055_06148933_06151962
CI01000055_06143884_06145039.mRNA mRNA upstream 17938 6142785 ~ 6145423 (+) True CI01000055_06143884_06145039
CI01000055_06087070_06088629.mRNA mRNA upstream 74613 6087070 ~ 6088748 (+) False CI01000055_06087070_06088629
CI01000055_06076584_06085051.mRNA mRNA upstream 77692 6076584 ~ 6085669 (+) True CI01000055_06076584_06085051
CI01000055_06164325_06174472.mRNA mRNA downstream 654 6164325 ~ 6174763 (+) False CI01000055_06164325_06174472
CI01000055_06177831_06186773.mRNA mRNA downstream 14160 6177831 ~ 6186773 (+) True CI01000055_06177831_06186773
CI01000055_06191356_06221464.mRNA mRNA downstream 27504 6191175 ~ 6221822 (+) False CI01000055_06191356_06221464
CI01000055_06233829_06238021.mRNA mRNA downstream 70158 6233829 ~ 6238021 (+) False CI01000055_06233829_06238021
CI01000055_06238643_06245138.mRNA mRNA downstream 74972 6238643 ~ 6245317 (+) False CI01000055_06238643_06245138
TU272705 other upstream 74602 6086825 ~ 6086887 (+) True G240319
TU272586 other upstream 545770 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272585 other upstream 547008 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453
TU272428 other upstream 619549 5536518 ~ 5543812 (+) True G240099
TU272472 other upstream 996714 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272730 other downstream 189 6163860 ~ 6164011 (+) True G240344
TU272693 other downstream 170653 6334892 ~ 6341165 (+) True G240308

Expression Profile