RNA id: TU272852


Basic Information

Item Value
RNA id TU272852
length 345
lncRNA type intronic
GC content 0.24
exon number 1
gene id G240453
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6200138 ~ 6200482 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTAATTGAAAAAATAATGCTTGTTTGGCAATGCAAATTGGCAAGCTAAATTTTTAAAACATTCATTCTCTTATAACTTAAAATAAACATTCTTTGTAAAATTCTGTTGAACAATAAATATAATGCCTATTTATAAATATATTAGCCTACTGTATCATATTTAATATGCAAATTTCTAGGGCCTATAATTTATCAATGTGACCAAAACTTTGCTGAAAAATCTGTTGTACACAATCTACTTCATGCCTTCTGTCCTCTGATTGATAGTTCATACTTTTTTTTTAATCAAGTAAAGTTTTTTTTTGCTTATAAATTTGTAATGATTTTTATAAAGTAAATGTAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272849 lncRNA upstream 36467 6163361 ~ 6163671 (+) True G240450
TU272843 lncRNA upstream 63998 6135903 ~ 6136140 (+) True G240444
TU272830 lncRNA upstream 76456 6120554 ~ 6123682 (+) True G240433
TU272829 lncRNA upstream 80354 6119544 ~ 6119784 (+) True G240432
TU272828 lncRNA upstream 80984 6118918 ~ 6119154 (+) True G240431
TU272717 lncRNA downstream 37503 6238643 ~ 6240167 (+) True CI01000055_06238643_06245138
TU272744 lncRNA downstream 130849 6331331 ~ 6333548 (+) True G240358
TU272888 lncRNA downstream 199511 6399993 ~ 6400807 (+) True G240472
TU272890 lncRNA downstream 200819 6401301 ~ 6401914 (+) True G240473
TU272900 lncRNA downstream 212372 6412854 ~ 6413389 (+) True G240479
CI01000055_06177831_06186773.mRNA mRNA upstream 13365 6177831 ~ 6186773 (+) True CI01000055_06177831_06186773
CI01000055_06164325_06174472.mRNA mRNA upstream 25375 6164325 ~ 6174763 (+) False CI01000055_06164325_06174472
CI01000055_06154806_06161718.mRNA mRNA upstream 38062 6154806 ~ 6162076 (+) True CI01000055_06154806_06161718
CI01000055_06148933_06151962.mRNA mRNA upstream 47933 6148684 ~ 6152205 (+) True CI01000055_06148933_06151962
CI01000055_06143884_06145039.mRNA mRNA upstream 54715 6142785 ~ 6145423 (+) True CI01000055_06143884_06145039
CI01000055_06233829_06238021.mRNA mRNA downstream 33347 6233829 ~ 6238021 (+) False CI01000055_06233829_06238021
CI01000055_06238643_06245138.mRNA mRNA downstream 38161 6238643 ~ 6245317 (+) False CI01000055_06238643_06245138
CI01000055_06247679_06298687.mRNA mRNA downstream 47197 6247679 ~ 6299580 (+) True CI01000055_06247679_06298687
CI01000055_06310117_06334586.mRNA mRNA downstream 109635 6310117 ~ 6334586 (+) False CI01000055_06310117_06334586
CI01000055_06349198_06350625.mRNA mRNA downstream 147929 6348411 ~ 6351516 (+) True CI01000055_06349198_06350625
TU272730 other upstream 6238 6163860 ~ 6164011 (+) True G240344
TU272705 other upstream 111379 6086825 ~ 6086887 (+) True G240319
TU272586 other upstream 582547 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272585 other upstream 583785 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453
TU272428 other upstream 656326 5536518 ~ 5543812 (+) True G240099
TU272693 other downstream 133842 6334892 ~ 6341165 (+) True G240308

Expression Profile