RNA id: TCONS_00016811


Basic Information

Item Value
RNA id TCONS_00016811
length 4876
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_008399
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 16521785 ~ 16546472 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTCCAAGATGCGTTTCACTGGATTCCGAACACCAAAATCGTTCATGGCCTTTGTGATGAGAAGATGGAAAATATTACTGGTGCTGAATGTGTTTACGGTGGCCGGCTTTATCACTTTTTGGGGCAAGTGCAATGTACGCACCACCAAAGGTGTTGGACAACAGATGGCTGTCGATTCAAGAGGACAAACCAATCTGAATGGATCTGTTCAGGAGACCAGCATCACTCATGATGTGCTCTTAAAGAGACTGGGATCACTGGAAGATGTGGTGTACAGGCAACTTAATGGTTTGTCCAAATCTCTTGGACTCATCGAAGGTTTTGGAGGCCGGGGTAGAGGAGGTATACCAGCCACACTTACACCAGCGGAAGAAAAGGAGGCCAAATTCCTGAGGGAGAAATATGGCTATAATGCATTTCTGAGTGACAAAATCTCTCTGGATAGATCACTTCCAGACTACCGTCCCAGCAAatGCAAAAAGGCCTTTTTTCCCCGTGACCTGCCACAGATTTCCATCATTTTTATCTTCGTTAATGAGGCGTTGTCTGTTATACTGCGTTCAGTCCATTCAGCTGTCAACCACACACCAGCACATCTTCTAAAGGAGATCATCTTGGTGGATGACAACAGTGATGATGGTGAGAAATGACAAGAGAATTGCATACTTACAATATTTTGCAAGTCTTACACCGTGTATTACAGGGTATCCGCTGAGTCTTAACatttcttaaatctcaaaatcaaaattttaggccttaaaaaagtcctaaatttactgaaatgtggGGTATaggttttaaatcttttttttaaacaggtcttaatttttctttgttcatgtatagctacccaatctggcaattaccacccatacaatcaccaacaatccatctcaataaaatttgaactttttatttaaaaagagcattTAATTACTTAGAGTAACACTTGCTTAAAAGATCTCCATTTTGTTACTGCTGAGAATACtgacctttatttttttattattaaattattattactgtagactgaagtaattgacagctatgtCTTGTTATATTATTGATAAGGGGTGTAGtgtttgtgaatggatatatttgaaaatcttttctaactggtatctttaaaaaaaatccttagcatttagcccagtataagtctaaaatttcatttataatggtcttaaaaaagtttttaatttaacttggtgaaacctgcagaaaccctggttttaATAACTcggcagaaacatttaaataccagagACATTCAAAAGTGCAGAACAGTGCACTGCACTCCCAACAAAATGGtcaggtttataatctaattgatacatattaaacctctctAACATTATTAAAAGCACATGCTGAGTGATTGATATATGTTGTATTGAGTCATTTTCaattacagtagtcaacatttgaagtggatcaaaaaatctttattttaaattagtctAAAGACAAGAATGTGTGTTgctcaatagttttaggacaactttgatgaaaggttttgatccacttcaaacatTGGCTgctgtatacagtatgtgtgctCAGTGCTTAACTTGTAAATAACTAGTTTTTTTTCCAGAACGGAAAAAAAAGTTACTGTTACCGACGTCTGCCACACAATTTCAGTTTTATGGGAACATGACGTCATTAGGCAAATATAGCACAAAAAAGCATCAAATTTAAACAgcctttaattattttgtatatttataatattaggtTAGGGGTCAACaatgggtaaaaaactaaaacaaacaaacattcattcattaatttattcattttcttttcggcttagtccctttattaatcagggatcaccatGGCGAAATGATccccaacttatccaacatatgttttacacagcggatgcccttccaactgcaacccatcactgggaaacatctatgcacatccagtcacactcatacatttTGGACAGTTGACCTTTCTCTAAGCCACACCCAACAACCACCATCTAataatcgtggcttagcaaccgtagctacgcgcaggggctctgtcaagctttcgagtggGGGAAACAGACCAGAGCgctgtgcatatggattgtgcaaatctgacacctgGTATCTGTAAATTTGAATGGGATGGTGGAATTTtatcccttttcaaaaccaaaaacccaagaggagaaatgccagcgtggatcaagctgtgcgaggggcgctaaaggagcggagataagttttttttttttgatattcctgacacattcagtgatagactgACGGCAATAattcacacacctcttaccctaaacagatctaaactgtgttgtCTACagaaatacaaagcaggttatgtttcacagctgtcttttttttgCTCGAAATTATGAgtaatgctccgtttaagccttcgcaATAGTAACGCTAGTCTTATACCGAATAGTGACATGAGTTAGTGATCCGGAAAATACGAATCAGaaaatctgttgctaactttactgaacttcatatttctaTCTATATCAAGCTACGAagatttgaaattacaaatcaacagaacaaaaccaagatacccggaggaaacccacaccaacacaaggagaacatgcaaactccatacagaaatgccaactgacccagctgaggctcgaaccagtgaccttcttgctgtaagatgatcgtgctaaccactgtgccactgcatcgccccaacaaacaaacatgtagctAAAAACATAAATTGTATGAAACATCAATATACTGTTTACTTACATCATTACAACATTCAGttcactattatgtgccaagTGAAAATAACTCAGTCcaatcttcaagaagagcccacagttagCTCTTCCATCATGTTTTCCGGCTGACGTGAGAttgctttgcttctgtctcctgctTTCCTGATCCATTCGCCCAGTTTATCTTCTCaagatctcttttgatcaggctcaATATCAAATTTACTCgtggtttaaaaaaatagtatATGCTTGACTGCctctggatttttaaaaatacaaatataatttatataggtCACTATGCCTTTATTAATTTTCGCTGCTCACAATAATCACCGACCAATGAGAGTAATCATAAACGTAAGAAGCCCATTGGTCACAATTGGTCCTACATGCTCAAAATCCACACAGCTTTGCTCGCTGTTTTACATTCGGACTCattcaaattctctctctctatctctctctctcatacacacacaaacacacacatgcaagtaTTTACCATGCAAAAGTTATGCcggatcaaataaaataaataccggagagcaaaacacaaatatctgacatttcccCGAACAGGATCCAACAAGATCCAcctcaaattaagcactgtgtgtgcaaattattttattttcacaatctGAGGTAAAATATCTACTCATGCTTTCAGTATAGCAAGAAATTTATTCTGAGGTAATCATTTTATGCTGTTGTTCAACCTCAGTGTTGCATAAATAGTTTCTAAAATTAAATTTTGGATGCTGCTGTCACAGATGGTTAAGAGGACATAGTGTAAAGAGTACGTTTATCACCTTATATTACATCGTAGCATTGTGTGCAGCTAGGACCAGGTGTTAGGGTATGTTTACATTGCAACAAATGTACTACAAACAGATGACAGCACTGTTTAAATGATccctgaaatctggactttactagaactatgttaagctgacacaatctacattgtaaaaagtgctatataaataaacatgaatcgaATTGAATTGAATCCCTGTTCAAACGGATCTGAAAAAAATGACTAAACCAAATCCATAGAAAAGCACTGCAAAATCACCCTGAACATATTTGAAACCATTAGCAGACATAGAAACAGTTTCCtagaaacattttttgtaaacCATTCTGACTGAGTCTAATCCGTTGTGTTGCATTCGGCGGGCAGTGTCAACACTGATAATCTGGAGTTGTTTGTCAAGCACCCTTTGCTCACGCTGCACATGACCACGCTTGTCTATTGTATCAAAGTGTGTGCTCAGGCCTTCCCAGAGAGACAGTTCAATTTCCATCGCATTGTTAGCATGAGCTGGTGGCAGAGGGCCAGCCGTCCATCAACGCGGAGGGAAAAGCCTGCGTTTGCTGAGATGAGGCGGCAGGCGAGCAGCACACCCAATTCTGTCCTCATAATGTCAGTGATTCACGGTTTGTCACTTGGAATGCAGATGACAGTGTTTAACGTGGGGAAAGAGATCGCTTTCCAAGAACGTGCTTTCCAGGGGGTTGATGTGGATCCCCATTGCACAGATCAAAGGCACAGGAAGAGTTTTGGCGTAGGAGACACATTCCCTCTGGTGTGGTTTAAACACAGCAACAAACACTCAAGTACCATGAAACAAGATTTCCCCCTCTTTaccatttgtgtgtgcgtgtgtgtgtgtgtgcatgtgtgtgtgtgcgtgtgcatgacAGTGCAACTGAAAGGCCCACTGGAGGAGTACGTCAACAAACGCTACCCGGGTCTTATCAAAATAGTGCGCAATCAGAAGAGAGAGGGGCTCATACGGGCTCGCATCGAGGGCTGGAAAGTGGCCACTGGGGAGGTGACCGGCTTCTTTGATGCCCATGTTGAATTCACGCCTGCATGGTGAGAATTGAGCACTTGCCACAATATGCTGCTGATCTTATAGATGGTCTCATTTTCATCTCGACTCCTCAAGACTGTTTATAACTGGTACTAACATCCATCTTGGGTGATCTAAACTGAAGTGCTTAGCTGAGACAGATATTGTAGATGTTTACAACTAGTAGTAACATGTTCAAGTTTATCCCTTGTGATTGGCTTTTAACTATAACAttttaagtgcattaatcaaGTATGTCAGTGGAAG

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110419-5 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system; optic cup; otic vesicle; and somite. Orthologous to human GALNT17 (polypeptide N-acetylgalactosaminyltransferase 17).

Ensembl:

ensembl_id ENSDART00000193455

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016805 lncRNA upstream 479622 16035869 ~ 16045504 (+) True XLOC_008394
TCONS_00018914 lncRNA upstream 506337 15987054 ~ 16018789 (+) False XLOC_008393
TCONS_00018915 lncRNA upstream 517825 15987069 ~ 16007301 (+) True XLOC_008393
TCONS_00018913 lncRNA upstream 742574 15778988 ~ 15782552 (+) False XLOC_008390
TCONS_00018765 lncRNA upstream 749969 15773878 ~ 15775157 (+) True XLOC_008389
TCONS_00016818 lncRNA downstream 381543 16914731 ~ 16920987 (+) True XLOC_008403
TCONS_00016834 lncRNA downstream 837108 17370296 ~ 17372928 (+) True XLOC_008410
TCONS_00016836 lncRNA downstream 843179 17376367 ~ 17378063 (+) True XLOC_008412
TCONS_00016839 lncRNA downstream 886925 17420113 ~ 17423619 (+) True XLOC_008413
TCONS_00016849 lncRNA downstream 1219727 17752915 ~ 17756122 (+) False XLOC_008417
TCONS_00016808 mRNA upstream 117143 16387088 ~ 16407983 (+) True XLOC_008397
TCONS_00016807 mRNA upstream 154023 16343073 ~ 16371103 (+) True XLOC_008396
TCONS_00016806 mRNA upstream 332918 16185118 ~ 16192208 (+) True XLOC_008395
TCONS_00016804 mRNA upstream 647294 15856178 ~ 15877832 (+) True XLOC_008392
TCONS_00016803 mRNA upstream 705528 15786210 ~ 15819598 (+) True XLOC_008391
TCONS_00016812 mRNA downstream 5246 16538434 ~ 16545956 (+) True XLOC_008399
TCONS_00016814 mRNA downstream 353008 16886196 ~ 16888072 (+) False XLOC_008401
TCONS_00016815 mRNA downstream 353012 16886200 ~ 16894875 (+) True XLOC_008401
TCONS_00016816 mRNA downstream 364366 16897554 ~ 16914645 (+) False XLOC_008402
TCONS_00016817 mRNA downstream 374897 16908085 ~ 16914441 (+) True XLOC_008402
TCONS_00016809 other upstream 6043 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016791 other upstream 1123486 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016758 other upstream 2567276 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016757 other upstream 3000138 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016731 other upstream 4959617 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016813 other downstream 296574 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016824 other downstream 567289 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016835 other downstream 840601 17373789 ~ 17373915 (+) True XLOC_008411
TCONS_00016838 other downstream 873782 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016851 other downstream 1222590 17755778 ~ 17756767 (+) False XLOC_008417

Expression Profile

//