RNA id: TU272890


Basic Information

Item Value
RNA id TU272890
length 348
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G240473
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6401301 ~ 6401914 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGGGGTCCATTCTCTGTTCCTTTGACTTTTGGGTCTTAATGTCACCTCTGAAGTTGCCTCCACGTTTTTCTTTGTGTCTAGAAAGTGCACATGCAATCCGACTGCCTACCTTGGCATTGTTATGGATGAGTCCTATATTGGCTTGCAAGGACTTCCCTTTAGTCAGCTCACTGACTCGCTGAAGGATAAAAGGAGTGACATCTCTTCCTGTGACACCTTTTGAGCTGGCCTTGGTCACAGCTGTTTGTATGGCATCTTCTATCTGTTGTCCAGTGGCTGCATGTTCCTCTGGGATGGGAACGGCCAACAGAAGACCACTTTGCAGCCCCAGAGATAGTGTGCTTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272888 lncRNA upstream 494 6399993 ~ 6400807 (+) True G240472
TU272744 lncRNA upstream 67753 6331331 ~ 6333548 (+) True G240358
TU272717 lncRNA upstream 161134 6238643 ~ 6240167 (+) True CI01000055_06238643_06245138
TU272852 lncRNA upstream 200819 6200138 ~ 6200482 (+) True G240453
TU272849 lncRNA upstream 237630 6163361 ~ 6163671 (+) True G240450
TU272900 lncRNA downstream 10940 6412854 ~ 6413389 (+) True G240479
TU272902 lncRNA downstream 12278 6414192 ~ 6414489 (+) True G240481
TU272710 lncRNA downstream 86091 6488005 ~ 6488500 (+) True G240324
TU272741 lncRNA downstream 94755 6496669 ~ 6498737 (+) True G240355
TU272701 lncRNA downstream 100138 6502052 ~ 6508423 (+) True G240315
CI01000055_06377893_06381162.mRNA mRNA upstream 20086 6377754 ~ 6381215 (+) True CI01000055_06377893_06381162
CI01000055_06357064_06359067.mRNA mRNA upstream 42234 6356424 ~ 6359067 (+) True CI01000055_06357064_06359067
CI01000055_06349198_06350625.mRNA mRNA upstream 49785 6348411 ~ 6351516 (+) True CI01000055_06349198_06350625
CI01000055_06310117_06334586.mRNA mRNA upstream 66715 6310117 ~ 6334586 (+) False CI01000055_06310117_06334586
CI01000055_06247679_06298687.mRNA mRNA upstream 101721 6247679 ~ 6299580 (+) True CI01000055_06247679_06298687
CI01000055_06420746_06423701.mRNA mRNA downstream 18250 6420164 ~ 6424149 (+) True CI01000055_06420746_06423701
CI01000055_06424643_06428152.mRNA mRNA downstream 22551 6424465 ~ 6428321 (+) True CI01000055_06424643_06428152
CI01000055_06432420_06434344.mRNA mRNA downstream 30506 6432420 ~ 6434486 (+) True CI01000055_06432420_06434344
CI01000055_06439930_06442140.mRNA mRNA downstream 37950 6439864 ~ 6442153 (+) True CI01000055_06439930_06442140
CI01000055_06443549_06446405.mRNA mRNA downstream 41635 6443549 ~ 6446441 (+) True CI01000055_06443549_06446405
TU272693 other upstream 60136 6334892 ~ 6341165 (+) True G240308
TU272730 other upstream 207401 6163860 ~ 6164011 (+) True G240344
TU272705 other upstream 312542 6086825 ~ 6086887 (+) True G240319
TU272586 other upstream 783710 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272585 other upstream 784948 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453

Expression Profile