Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016812 |
| length | 837 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 6 |
| gene id | XLOC_008399 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 16521785 ~ 16546472 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006486 | protein glycosylation | biological_process |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016757 | transferase activity, transferring glycosyl groups | molecular_function |
| GO:0030246 | carbohydrate binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-110419-5 | Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system; optic cup; otic vesicle; and somite. Orthologous to human GALNT17 (polypeptide N-acetylgalactosaminyltransferase 17). |
| ensembl_id | ENSDART00000191557 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00016805 | lncRNA | upstream | 492930 | 16035869 ~ 16045504 (+) | True | XLOC_008394 |
| TCONS_00018914 | lncRNA | upstream | 519645 | 15987054 ~ 16018789 (+) | False | XLOC_008393 |
| TCONS_00018915 | lncRNA | upstream | 531133 | 15987069 ~ 16007301 (+) | True | XLOC_008393 |
| TCONS_00018913 | lncRNA | upstream | 755882 | 15778988 ~ 15782552 (+) | False | XLOC_008390 |
| TCONS_00018765 | lncRNA | upstream | 763277 | 15773878 ~ 15775157 (+) | True | XLOC_008389 |
| TCONS_00016818 | lncRNA | downstream | 368775 | 16914731 ~ 16920987 (+) | True | XLOC_008403 |
| TCONS_00016834 | lncRNA | downstream | 824340 | 17370296 ~ 17372928 (+) | True | XLOC_008410 |
| TCONS_00016836 | lncRNA | downstream | 830411 | 17376367 ~ 17378063 (+) | True | XLOC_008412 |
| TCONS_00016839 | lncRNA | downstream | 874157 | 17420113 ~ 17423619 (+) | True | XLOC_008413 |
| TCONS_00016849 | lncRNA | downstream | 1206959 | 17752915 ~ 17756122 (+) | False | XLOC_008417 |
| TCONS_00016811 | mRNA | upstream | 5246 | 16525126 ~ 16533188 (+) | False | XLOC_008399 |
| TCONS_00016808 | mRNA | upstream | 130451 | 16387088 ~ 16407983 (+) | True | XLOC_008397 |
| TCONS_00016807 | mRNA | upstream | 167331 | 16343073 ~ 16371103 (+) | True | XLOC_008396 |
| TCONS_00016806 | mRNA | upstream | 346226 | 16185118 ~ 16192208 (+) | True | XLOC_008395 |
| TCONS_00016804 | mRNA | upstream | 660602 | 15856178 ~ 15877832 (+) | True | XLOC_008392 |
| TCONS_00016814 | mRNA | downstream | 340240 | 16886196 ~ 16888072 (+) | False | XLOC_008401 |
| TCONS_00016815 | mRNA | downstream | 340244 | 16886200 ~ 16894875 (+) | True | XLOC_008401 |
| TCONS_00016816 | mRNA | downstream | 351598 | 16897554 ~ 16914645 (+) | False | XLOC_008402 |
| TCONS_00016817 | mRNA | downstream | 362129 | 16908085 ~ 16914441 (+) | True | XLOC_008402 |
| TCONS_00016819 | mRNA | downstream | 484517 | 17030473 ~ 17048822 (+) | False | XLOC_008404 |
| TCONS_00016809 | other | upstream | 19351 | 16518967 ~ 16519083 (+) | True | XLOC_008398 |
| TCONS_00016791 | other | upstream | 1136794 | 15394242 ~ 15401640 (+) | True | XLOC_008381 |
| TCONS_00016758 | other | upstream | 2580584 | 13957722 ~ 13957850 (+) | True | XLOC_008361 |
| TCONS_00016757 | other | upstream | 3013446 | 13524874 ~ 13524988 (+) | True | XLOC_008360 |
| TCONS_00016731 | other | upstream | 4972925 | 11565391 ~ 11565509 (+) | True | XLOC_008343 |
| TCONS_00016813 | other | downstream | 283806 | 16829762 ~ 16829876 (+) | True | XLOC_008400 |
| TCONS_00016824 | other | downstream | 554521 | 17100477 ~ 17101668 (+) | False | XLOC_008406 |
| TCONS_00016835 | other | downstream | 827833 | 17373789 ~ 17373915 (+) | True | XLOC_008411 |
| TCONS_00016838 | other | downstream | 861014 | 17406970 ~ 17416607 (+) | False | XLOC_008413 |
| TCONS_00016851 | other | downstream | 1209822 | 17755778 ~ 17756767 (+) | False | XLOC_008417 |
