RNA id: TU272987


Basic Information

Item Value
RNA id TU272987
length 209
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G240557
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6653494 ~ 6653702 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTGGTAACGTCTAATGCTGCCTTGACGGATTTGGTGACTTAGCTTTATATCTGCAACTGTTCACATCAGACTAAAATGCTTTTTAAAGTATGAAACAGAAAAGATTAGACATCACCAGGGTTAATTTTGGTAACATTAGAGGAGATTAGACATCATCAGGGTGAATTTTGGTAACATTAAAGCCATTCTTTGTGAAATAGAGGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272985 lncRNA upstream 2168 6651065 ~ 6651326 (+) True G240555
TU272980 lncRNA upstream 12380 6640628 ~ 6641114 (+) True G240550
TU272928 lncRNA upstream 140602 6512684 ~ 6512892 (+) True CI01000055_06513312_06529035
TU272701 lncRNA upstream 145071 6502052 ~ 6508423 (+) True G240315
TU272741 lncRNA upstream 154757 6496669 ~ 6498737 (+) True G240355
TU272991 lncRNA downstream 3824 6657526 ~ 6657809 (+) True G240561
TU272993 lncRNA downstream 16462 6670164 ~ 6670368 (+) True G240563
TU272995 lncRNA downstream 19582 6673284 ~ 6673621 (+) True G240565
TU272951 lncRNA downstream 22465 6676167 ~ 6677490 (+) True G240524
TU273019 lncRNA downstream 100629 6754331 ~ 6754711 (+) True G240584
CI01000055_06530845_06542679.mRNA mRNA upstream 110769 6529991 ~ 6542725 (+) True CI01000055_06530845_06542679
CI01000055_06513312_06529035.mRNA mRNA upstream 123984 6512366 ~ 6529510 (+) False CI01000055_06513312_06529035
CI01000055_06487661_06489302.mRNA mRNA upstream 164108 6487661 ~ 6489386 (+) False CI01000055_06487661_06489302
CI01000055_06472841_06481094.mRNA mRNA upstream 172338 6472841 ~ 6481156 (+) True CI01000055_06472841_06481094
CI01000055_06443549_06446405.mRNA mRNA upstream 207053 6443549 ~ 6446441 (+) True CI01000055_06443549_06446405
CI01000055_06716393_06716976.mRNA mRNA downstream 62691 6716393 ~ 6716976 (+) True CI01000055_06716393_06716976
CI01000055_06718992_06719248.mRNA mRNA downstream 65290 6718992 ~ 6719559 (+) True CI01000055_06718992_06719248
CI01000055_06720233_06726592.mRNA mRNA downstream 66168 6719870 ~ 6727509 (+) True CI01000055_06720233_06726592
TU272693 other upstream 312329 6334892 ~ 6341165 (+) True G240308
TU272730 other upstream 459594 6163860 ~ 6164011 (+) True G240344
TU272705 other upstream 564735 6086825 ~ 6086887 (+) True G240319
TU272586 other upstream 1035903 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272585 other upstream 1037141 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453

Expression Profile