RNA id: TU272993


Basic Information

Item Value
RNA id TU272993
length 205
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G240563
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6670164 ~ 6670368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGAATGTCCGCTGAGGAAAGCGATATCTTTTGTCTTTGTCCTTTTAACATTTAAGACATTCCCATGACAGCACTAGTCAATTTGTCAGTTGAGTCTTGTAAGATGTTGTTTTAGTCCATTTCAATATAAAAGTCTTTGCGACTGACTCACTCATAAAGACAGTCTTTGCTGCCATCTAATGGCGTATTAACGTAACTTTCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272991 lncRNA upstream 12355 6657526 ~ 6657809 (+) True G240561
TU272987 lncRNA upstream 16462 6653494 ~ 6653702 (+) True G240557
TU272985 lncRNA upstream 18838 6651065 ~ 6651326 (+) True G240555
TU272980 lncRNA upstream 29050 6640628 ~ 6641114 (+) True G240550
TU272928 lncRNA upstream 157272 6512684 ~ 6512892 (+) True CI01000055_06513312_06529035
TU272995 lncRNA downstream 2916 6673284 ~ 6673621 (+) True G240565
TU272951 lncRNA downstream 5799 6676167 ~ 6677490 (+) True G240524
TU273019 lncRNA downstream 83963 6754331 ~ 6754711 (+) True G240584
CI01000055_06530845_06542679.mRNA mRNA upstream 127439 6529991 ~ 6542725 (+) True CI01000055_06530845_06542679
CI01000055_06513312_06529035.mRNA mRNA upstream 140654 6512366 ~ 6529510 (+) False CI01000055_06513312_06529035
CI01000055_06487661_06489302.mRNA mRNA upstream 180778 6487661 ~ 6489386 (+) False CI01000055_06487661_06489302
CI01000055_06472841_06481094.mRNA mRNA upstream 189008 6472841 ~ 6481156 (+) True CI01000055_06472841_06481094
CI01000055_06443549_06446405.mRNA mRNA upstream 223723 6443549 ~ 6446441 (+) True CI01000055_06443549_06446405
CI01000055_06716393_06716976.mRNA mRNA downstream 46025 6716393 ~ 6716976 (+) True CI01000055_06716393_06716976
CI01000055_06718992_06719248.mRNA mRNA downstream 48624 6718992 ~ 6719559 (+) True CI01000055_06718992_06719248
CI01000055_06720233_06726592.mRNA mRNA downstream 49502 6719870 ~ 6727509 (+) True CI01000055_06720233_06726592
TU272693 other upstream 328999 6334892 ~ 6341165 (+) True G240308
TU272730 other upstream 476264 6163860 ~ 6164011 (+) True G240344
TU272705 other upstream 581405 6086825 ~ 6086887 (+) True G240319
TU272586 other upstream 1052573 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272585 other upstream 1053811 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453

Expression Profile