RNA id: TU272995


Basic Information

Item Value
RNA id TU272995
length 338
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G240565
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6673284 ~ 6673621 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAACACTGCTCAAAAAAATTAAAGGAAAACTTTGAAAACACATGAGATCTCAACGGGGAAAATATCATGCTGGATATCTATACTGATATGGAGTGGGTAATGTGTTAGGAACAAAAGGATGCCACATCGTTGATGGAGATGAAAATTATCAACCTACAGAGGACTGAATTCAAAGACACCCTGAAAATCAAAGTGAAAAAATGATGCAGAAATCTAGTCCATTTTGCTGAAATTTCATTGCAGCAACTCAAAATGGTACTCAGTAGTTTGTATGGCCCCCACGTGCTTGTATGCATGCCTGACAATGTCGGGGCATGCTCCTAATGAGACGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272993 lncRNA upstream 2916 6670164 ~ 6670368 (+) True G240563
TU272991 lncRNA upstream 15475 6657526 ~ 6657809 (+) True G240561
TU272987 lncRNA upstream 19582 6653494 ~ 6653702 (+) True G240557
TU272985 lncRNA upstream 21958 6651065 ~ 6651326 (+) True G240555
TU272980 lncRNA upstream 32170 6640628 ~ 6641114 (+) True G240550
TU272951 lncRNA downstream 2546 6676167 ~ 6677490 (+) True G240524
TU273019 lncRNA downstream 80710 6754331 ~ 6754711 (+) True G240584
CI01000055_06530845_06542679.mRNA mRNA upstream 130559 6529991 ~ 6542725 (+) True CI01000055_06530845_06542679
CI01000055_06513312_06529035.mRNA mRNA upstream 143774 6512366 ~ 6529510 (+) False CI01000055_06513312_06529035
CI01000055_06487661_06489302.mRNA mRNA upstream 183898 6487661 ~ 6489386 (+) False CI01000055_06487661_06489302
CI01000055_06472841_06481094.mRNA mRNA upstream 192128 6472841 ~ 6481156 (+) True CI01000055_06472841_06481094
CI01000055_06443549_06446405.mRNA mRNA upstream 226843 6443549 ~ 6446441 (+) True CI01000055_06443549_06446405
CI01000055_06716393_06716976.mRNA mRNA downstream 42772 6716393 ~ 6716976 (+) True CI01000055_06716393_06716976
CI01000055_06718992_06719248.mRNA mRNA downstream 45371 6718992 ~ 6719559 (+) True CI01000055_06718992_06719248
CI01000055_06720233_06726592.mRNA mRNA downstream 46249 6719870 ~ 6727509 (+) True CI01000055_06720233_06726592
TU272693 other upstream 332119 6334892 ~ 6341165 (+) True G240308
TU272730 other upstream 479384 6163860 ~ 6164011 (+) True G240344
TU272705 other upstream 584525 6086825 ~ 6086887 (+) True G240319
TU272586 other upstream 1055693 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272585 other upstream 1056931 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453

Expression Profile