RNA id: TCONS_00016818


Basic Information

Item Value
RNA id TCONS_00016818
length 885
lncRNA type lincRNA
GC content 0.43
exon number 3
gene id XLOC_008403
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 16914731 ~ 16920987 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGTACAGACATACGTGTGTAAAAACAACAGTATACCGCATGTCATGCTCATCTCAGCCAGACTGTTTATACTACAAGCGGCTCTATTCATATGCGTACATGACATAAGGCAGGGCTCAGAGGGAATGTGGTGCTTGGCAGGATCAGGGTCACGAGTTCTCCGAGCTGATGGGGCTTTCTCCACTTTATGTCAGTGAGAAACTACCAGGCTGACCTCTGCCAATTCAGCTGAGGTTAGCACCATCTGCGCCCGTGAGGAGGCCTGGCATGAAGAGATCTCTGAATGGAGCTCTGACAGACCAATAtcattcgttcatcaaaTAAAAGACAGAAGCCAGTCATATGCGTTTAGAGATgcaaaaagatttgatccgtttaTCTTTCGAGTCCTCGAGTTTAAATCATCGCACTTTACATGAAGTCACAAAAGTCCCTTCACACTTGCTAAATGATTTGACCACTTGATTTGGACTGACAGTCTGAGTAGGGCTTTAGGTAACAGTTCCTGTGTGAGCATTCATTCTTTCATCCCTACACTGTTGACTGTTTTGATAGTGAAATTTGGCTGAAATAATGCTAATGTGCACCTTCAGAGGCTTAAAGTGAAGTTAACCATCAAGCTTTTCACATGAAGCAACCATCTAACTGATTTTGGATGAAACATACGCATAGTTGAATATGTGAATGTAAAGCTTTGTGTATAACCGTTTACAAGGTGTTGTATCTGGACATCTTTGTGTCTGTGTTCCATGTTCCAACAGTTTGTGCTGATCCCAGTCGCACTGTGTTCATTTGTACTGACTGTTCTTGCTCGTTAGCGGACTCTTGGGGGAATAAGTACATAAGATGAGACTGTACACTGCCTATCTGTTAGGTTCTTTAAA

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0043101 purine-containing compound salvage biological_process
GO:0017144 drug metabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process biological_process
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process biological_process
GO:0006558 L-phenylalanine metabolic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155243

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016805 lncRNA upstream 869227 16035869 ~ 16045504 (+) True XLOC_008394
TCONS_00018914 lncRNA upstream 895942 15987054 ~ 16018789 (+) False XLOC_008393
TCONS_00018915 lncRNA upstream 907430 15987069 ~ 16007301 (+) True XLOC_008393
TCONS_00018913 lncRNA upstream 1132179 15778988 ~ 15782552 (+) False XLOC_008390
TCONS_00018765 lncRNA upstream 1139574 15773878 ~ 15775157 (+) True XLOC_008389
TCONS_00016834 lncRNA downstream 449309 17370296 ~ 17372928 (+) True XLOC_008410
TCONS_00016836 lncRNA downstream 455380 17376367 ~ 17378063 (+) True XLOC_008412
TCONS_00016839 lncRNA downstream 499126 17420113 ~ 17423619 (+) True XLOC_008413
TCONS_00016849 lncRNA downstream 831928 17752915 ~ 17756122 (+) False XLOC_008417
TCONS_00018916 lncRNA downstream 835482 17756469 ~ 17757994 (+) True XLOC_008417
TCONS_00016816 mRNA upstream 86 16897554 ~ 16914645 (+) False XLOC_008402
TCONS_00016817 mRNA upstream 290 16908085 ~ 16914441 (+) True XLOC_008402
TCONS_00016815 mRNA upstream 19856 16886200 ~ 16894875 (+) True XLOC_008401
TCONS_00016814 mRNA upstream 26659 16886196 ~ 16888072 (+) False XLOC_008401
TCONS_00016810 mRNA upstream 368259 16521785 ~ 16546472 (+) False XLOC_008399
TCONS_00016819 mRNA downstream 109486 17030473 ~ 17048822 (+) False XLOC_008404
TCONS_00016820 mRNA downstream 109954 17030941 ~ 17043649 (+) False XLOC_008404
TCONS_00016821 mRNA downstream 110124 17031111 ~ 17048574 (+) True XLOC_008404
TCONS_00016822 mRNA downstream 153198 17074185 ~ 17095655 (+) True XLOC_008405
TCONS_00016823 mRNA downstream 179425 17100412 ~ 17125217 (+) False XLOC_008406
TCONS_00016813 other upstream 84855 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016809 other upstream 395648 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016791 other upstream 1513091 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016758 other upstream 2956881 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016757 other upstream 3389743 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016824 other downstream 179490 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016835 other downstream 452802 17373789 ~ 17373915 (+) True XLOC_008411
TCONS_00016838 other downstream 485983 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016851 other downstream 834791 17755778 ~ 17756767 (+) False XLOC_008417
TCONS_00016857 other downstream 1165715 18086702 ~ 18086816 (+) True XLOC_008420

Expression Profile

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