RNA id: TCONS_00016832


Basic Information

Item Value
RNA id TCONS_00016832
length 2135
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_008410
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17343319 ~ 17373352 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGAACGTGAGTCATTTCCGCTTGCTGTTGTTGCTTATTGCTGCTGTCGGGACGGAAGAGTGGTGTCAGGTGTCTGAACTGTAAACAGTAGTGGGAGATGGCTGCAAATGGAGCAGAATGTGAGCAGCCGCAGAAAAGACTAGGGCCAAAAGACAAGCAGAACGGCAGCTCTACAGATTCATctctgagagagagaaagcagcTGGACCGAGAGGAGCGTCTTTCTTTAGTGTTGTGGAAAAGGCCTTTTATCACGCTACAGTATTTTTTCCTAGAAACTGTCATTACTCTTAAAGAATGGACATGGAAGCTTTGGCAGAGAAGAGGTGTGGTATTTCTGACAGTAGTCCTTTTTTCACTTTTCTCACTGGCTTATTCAATAGAAGGAGCACATCAGGAGTATGTGCAGCACCTGGAGAAGAAGTTCCTGTGGTGTGCCTACTGGGTAGGCCTGGGTATTTTGTCTTCGGTTGGTCTCGGCACTGGACTACATACGTTTCTCCTGTACCTGGGTCCACACATAGCTTCTGTCACCTTGGCTGCGTATGAATGTGGCTCTGTGAACTTCCCCGAGCCGCCGTATCCAGCACAGATAGTGTGTCCGGAGGATGAGGCCCTGCAGGAGAGCATCTCACTGTGGACCATCATGTCCAAAGTTCGCTTGGAAGCCTGCATGTGGGGTGCGGGCACAGCCATTGGTGAGCTGCCTCCATACTTCATGGCTCGAGCGGCACGAATGTCTGGAGCAGATCCTGATGATGAGGATTATGAAGAATTCGAGGAGATGCTGGAGCATTCACAGAGCGCACAGGATTTTGCATCAAGAGCCAAACTTGCAGTGCAAAACATGGTGCAGAAAGTGGGATTTTTTGGAATTCTGGCATGTGCCTCtATCCCGAATCCCCTGTTTGACCTTGCTGGAATCACCTGCGGTCACTTCCTAATACCCTTCTGGACCTTCTTCGGAGCAACTCTTATTGGAAAGGCCATTATTAAGATGCACATTCAGAAACTGTTTGTTATCATTACGTTCAGCAAGCACATAGTGGAGCAGATGGTGTCTCTGATCGGCGTTATTCCTGGAGTCGGAGCATCTCTTCAGAAGCCTTTCAGGGAGTATTTGGAGGCCCAGAGAACCAAGCTTCACAACCCAGCAGGCGATGGAGCAGCAGCAGGTGAAAGCTGGCTCTCGTGGGTGTTTGAGAAAGTGGTGCTGGTGATGGTGTGCTACTTCATCCTGTCCATCATCAACTCCATGGCACAGAGCTACGCCAAACGTCTCCAGCAGAAGAAATACTCAGAGGAGAAAACTAAATGACGGACTCACACAAAAGCATCTCGCGCTCCTCCTCGGGAACCTACGAAATATTTAAGCTAAAACTGCTACATGAGCACTGATTTCTGTGCGCTTCTGTATGTTAACCTTCATCCAGATCCCTTTAGTTCAGTCAAGTCCCTCTTCATTTGTGTGTAGTTTGCtcggctatttaaaaaaaaaaaacacatttaactttTGGAGCGTTTTAGTCTTTAAACTACCGAGGCAGTCTAGACGACAGGCTGTGTGTGGACTCATATATTTGTTGCAATGCCTTATGCAACATTCGGAGGTCATGCTTCCATTGAAGTGAATACAGTTCTTAATCAAtagattgatttatttaatttctaacaTACAGGTATGGATGGGCAGGGTCTGCTTTTTTCTGAGGTTTCGTGATTGGAATTTTCAGGGATATGTTTTTTTAATGGATATTGATGtcattttttgtatttctttaaCTGTTCGAAGAGGAGAGCAATATCAACTCGGATCATGGTGGTTTCTCAATAGTTTGCACATCTTGTAAGTTATGGTTGGACTAGACACGCACATGATGTTTATTCTCTTAAACTTAAATCTTAAACCAAAATGTCACAAACTTAGTGGATGTAACTTTTAACCCAAGAAAATGACATGCTGTTTGCATTTGTTTGTGCATTTGGACCTTTGACTTTTGAACTAAAACCATAAGTTGATCCATCCTTTTAGTTTCTTATTTGGGCTGAAATATTTGTGTAGCTAACTGAAAtacttaatttttctttctcagaACTATTGTTGCATTTGTTTgacattaaattgattaatacA

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0007030 Golgi organization biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005773 vacuole cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04140 Autophagy - animal

ZFIN:

id description
ZDB-GENE-030131-8733 Acts upstream of or within autophagy and lipoprotein transport. Predicted to be located in endoplasmic reticulum-Golgi intermediate compartment membrane; plasma membrane; and vacuolar membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Is expressed in several structures, including EVL; digestive system; intestinal bulb primordium; nervous system; and optic vesicle. Orthologous to human VMP1 (vacuole membrane protein 1).

Ensembl:

ensembl_id ENSDART00000018461

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016818 lncRNA upstream 422332 16914731 ~ 16920987 (+) True XLOC_008403
TCONS_00016805 lncRNA upstream 1297815 16035869 ~ 16045504 (+) True XLOC_008394
TCONS_00018914 lncRNA upstream 1324530 15987054 ~ 16018789 (+) False XLOC_008393
TCONS_00018915 lncRNA upstream 1336018 15987069 ~ 16007301 (+) True XLOC_008393
TCONS_00018913 lncRNA upstream 1560767 15778988 ~ 15782552 (+) False XLOC_008390
TCONS_00016836 lncRNA downstream 3015 17376367 ~ 17378063 (+) True XLOC_008412
TCONS_00016839 lncRNA downstream 46761 17420113 ~ 17423619 (+) True XLOC_008413
TCONS_00016849 lncRNA downstream 379563 17752915 ~ 17756122 (+) False XLOC_008417
TCONS_00018916 lncRNA downstream 383117 17756469 ~ 17757994 (+) True XLOC_008417
TCONS_00018766 lncRNA downstream 512846 17886198 ~ 17923213 (+) False XLOC_008419
TCONS_00016830 mRNA upstream 3121 17286004 ~ 17340198 (+) False XLOC_008409
TCONS_00016831 mRNA upstream 3834 17321218 ~ 17339485 (+) True XLOC_008409
TCONS_00016829 mRNA upstream 49310 17285989 ~ 17294009 (+) False XLOC_008409
TCONS_00016828 mRNA upstream 58131 17258246 ~ 17285188 (+) True XLOC_008408
TCONS_00016827 mRNA upstream 88012 17251191 ~ 17255307 (+) True XLOC_008407
TCONS_00016837 mRNA downstream 33568 17406920 ~ 17424590 (+) False XLOC_008413
TCONS_00016840 mRNA downstream 68382 17441734 ~ 17489726 (+) False XLOC_008414
TCONS_00016841 mRNA downstream 73444 17446796 ~ 17451345 (+) True XLOC_008414
TCONS_00016842 mRNA downstream 248023 17621375 ~ 17651879 (+) False XLOC_008415
TCONS_00016843 mRNA downstream 249763 17623115 ~ 17652807 (+) True XLOC_008415
TCONS_00016824 other upstream 241651 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016813 other upstream 513443 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016809 other upstream 824236 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016791 other upstream 1941679 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016758 other upstream 3385469 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016835 other downstream 437 17373789 ~ 17373915 (+) True XLOC_008411
TCONS_00016838 other downstream 33618 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016851 other downstream 382426 17755778 ~ 17756767 (+) False XLOC_008417
TCONS_00016857 other downstream 713350 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016870 other downstream 1951375 19324727 ~ 19329943 (+) False XLOC_008430

Expression Profile

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