RNA id: TU277341


Basic Information

Item Value
RNA id TU277341
length 246
lncRNA type sense_over
GC content 0.51
exon number 1
gene id CI01000057_00475661_00476027
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 475392 ~ 476027 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATGAACGCTTAAAGGGTCAGGAGGTCTCAGTGCTGTTGCAAGGGCTGGAGCTTCCAGAGGCACGTCCAGTGGCATTGGAGTACAGCCTGTTGTGCCACCACAATATAGCCACCAGTTGCATAACTACCAGATGCCACCAGACACAGCGGGACAGGCAAAAACAAAGATTAGAAAGATCCAGCCCTCAGCTACCTTTACATCTGCCACAGCAACTTCATTTGAGCCATCAGCCTTACACCCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277275 lncRNA downstream 60077 413912 ~ 415609 (-) True G244287
TU277313 lncRNA downstream 67857 407220 ~ 407829 (-) True G244305
TU277307 lncRNA downstream 69713 405599 ~ 405973 (-) True G244304
TU277308 lncRNA downstream 69791 405583 ~ 405895 (-) False G244304
TU277261 lncRNA downstream 131991 343461 ~ 343695 (-) True CI01000057_00339874_00343207
TU277348 lncRNA upstream 4012 479943 ~ 480154 (-) True G244338
TU277349 lncRNA upstream 4266 480197 ~ 480417 (-) True G244339
TU277375 lncRNA upstream 98605 574536 ~ 574885 (-) False G244359
TU277372 lncRNA upstream 98654 574585 ~ 574885 (-) False G244359
TU277374 lncRNA upstream 98654 574585 ~ 574786 (-) True G244359
CI01000057_00459703_00467870.mRNA mRNA downstream 7816 458943 ~ 467870 (-) True CI01000057_00459703_00467870
CI01000057_00420698_00421063.mRNA mRNA downstream 54623 419986 ~ 421063 (-) True CI01000057_00420698_00421063
CI01000057_00409300_00412579.mRNA mRNA downstream 63061 409168 ~ 412625 (-) True CI01000057_00409300_00412579
CI01000057_00400397_00400972.mRNA mRNA downstream 74672 400057 ~ 401014 (-) True CI01000057_00400397_00400972
CI01000057_00381820_00385585.mRNA mRNA downstream 90101 381333 ~ 385585 (-) True CI01000057_00381820_00385585
CI01000057_00534471_00559759.mRNA mRNA upstream 57657 533588 ~ 559759 (-) True CI01000057_00534471_00559759
CI01000057_00561471_00562830.mRNA mRNA upstream 85298 561229 ~ 562857 (-) True CI01000057_00561471_00562830
CI01000057_00628126_00628851.mRNA mRNA upstream 151784 627715 ~ 630166 (-) True CI01000057_00628126_00628851
CI01000057_00873279_00873578.mRNA mRNA upstream 397343 873274 ~ 873578 (-) True CI01000057_00873279_00873578
CI01000057_00938618_00949690.mRNA mRNA upstream 462140 938071 ~ 949779 (-) True CI01000057_00938618_00949690
TU277369 other upstream 94599 570530 ~ 570914 (-) False G244358
TU277370 other upstream 94599 570530 ~ 571028 (-) True G244358
TU277905 other upstream 1325653 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 1444125 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 3415804 3895949 ~ 3897691 (-) True G246256

Expression Profile