RNA id: CI01000057_01261251_01262315.mRNA



Basic Information


Item Value
RNA id CI01000057_01261251_01262315.mRNA
length 1543
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000057_01261251_01262315
representative True

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1260686 ~ 1262315 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTCTTTGCACCCATTTCTCTTAGCCTACAGAGGCATCCACATAGCGGGTATTGTTCATCGTTACCGTAGGAGAAGGTACCGTCAAAGGGTGCATGCTGAGCGTGCCAAACCACTCGAGCAATACACATCAGAAGATCTGTATGCATGTTTTCGCTTTGGGAGAGATGACATTAAGTACATTGCAGATCTTGTCAGGCCAACAATCCAACACCAAACCCAAAGGAGTCATGCTTTATCTGTGGAGGAACAGTGCTTAATCGCTCTGCGCTTTTACGCATGTGGGACTTTCTACCAAGTAGTGGTGACATTATGGGAGATGACCAGACAGCTCAGACTAAGCACAAGTTTTTTTCAAATGGGGAACATGCCTAGCACTATTGGTGCTATTGATTGTACTCATGTGCATATCCAAGCACCTTGTGAAAGGGAGTGGGAGTATGTCAATCGAAAGGGGAGGCACAGTATCAACATCCAACTTGTGGGCAACGCCGACCTCTTAATAACCAACTGTGTTGTGAAATGGCCAGGGTCTGTTCATGATGCAAGTATTCTAAGAGAAAGTGCACTATACAGAGAGCTTCAATCCCACCGACCAAATGGCATAGTATTAGGAGACAGCGCATATCCACTCCTACCATGGCTAATGACCCCTTTTTCAGTTGCAAACACACCTGAGCACACACGCTTCAACTCCTCACATTGCAAAACAAGATGTGCCATTGAACGCATAAATGGAGTCCTGAAGAGACGGTTTGAGTGTCTTAACTACTTGCGAGTACAACCCAAGGTGGCATGCAACATAATCCTTGCCTGTATTGTTTTGCATAACATCACCACCAGGCGTCATGTCCCTCTTGATGACAATTTTGATGGACCTGAGCCTAATGTAGAACCAGAACAGCCGCCAATGTTCTTACCTAATGAAGAACGCACTGGACATGCAATTAGAGATGCAATTGTGAGAAATTACTTTTAACTAGGCTACTGAATATATTTGTTGTTGTCATTGCCATTAATATACTGTGTAATTATAGAGCTGTGAGCAACAGTGACATTTATTTGACAGCTGATAGCTTTAAGATTTTTGTTTGTTTGTTTGTTTTGTTTACCATATCTCATTAGATGTGACATGGTTCATATATGCTTCAAATATGAAGAAATGTATATATCATCAGTAAACATTGATTTTGTGATCATTCAATTAAAAAAAAAAAAAAAAAACTCTGATTTTATTTGGTTCGAAAAATCACAACTGAATCCACCCTTCTGATGGGATCAGGATAATCCTGTTTTTTTTTTTTGGATCAAATAGATCCCAAACCGAGTTCAAAGTTTTGAAAAACCCAAAGGACAGGTTTGATCCAGATCAAATGTAAGATCGGATTACATGCTCTGATCTTAGTTTGGAATCCCTCTTTTGCTTTTGTAAAACCCATTTTCAAGATTTGATCCAATTCGTGATCCGAAAAGATTACTTTTGAAAAACTGGGCCCAGGAGTTTATTGCAGATTTGAACTGTGAAACAGGTACAGTTCAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU277593 lncRNA downstream 49937 1208498 ~ 1210749 (-) True G244548
TU277657 lncRNA downstream 63851 1196572 ~ 1196835 (-) True G244606
TU277603 lncRNA downstream 67447 1192945 ~ 1193239 (-) True G244558
TU277643 lncRNA downstream 93194 1166310 ~ 1167492 (-) True G244594
TU277642 lncRNA downstream 93286 1165176 ~ 1167400 (-) False G244594
TU277661 lncRNA upstream 712 1263027 ~ 1263250 (-) True G244610
TU277667 lncRNA upstream 21813 1284128 ~ 1284855 (-) True G244616
TU277669 lncRNA upstream 23767 1286082 ~ 1286340 (-) True G244618
TU277670 lncRNA upstream 24732 1287047 ~ 1287383 (-) True G244619
TU277700 lncRNA upstream 60540 1322855 ~ 1323236 (-) True G244633
CI01000057_01252690_01256408.mRNA mRNA downstream 4278 1252647 ~ 1256408 (-) True CI01000057_01252690_01256408
CI01000057_01235433_01244747.mRNA mRNA downstream 15504 1235177 ~ 1245182 (-) True CI01000057_01235433_01244747
CI01000057_01219430_01223491.mRNA mRNA downstream 37195 1219430 ~ 1223491 (-) True CI01000057_01219430_01223491
CI01000057_01189209_01190703.mRNA mRNA downstream 69983 1188913 ~ 1190703 (-) True CI01000057_01189209_01190703
CI01000057_01145522_01147560.mRNA mRNA downstream 112914 1144062 ~ 1147772 (-) True CI01000057_01145522_01147560
CI01000057_01356170_01359401.mRNA mRNA upstream 93094 1355409 ~ 1359970 (-) False CI01000057_01356170_01359401
CI01000057_01471460_01487413.mRNA mRNA upstream 208812 1471127 ~ 1487762 (-) True CI01000057_01471460_01487413
CI01000057_01542990_01546030.mRNA mRNA upstream 280482 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_01559593_01572133.mRNA mRNA upstream 297232 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01707526_01708449.mRNA mRNA upstream 445180 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
TU277370 other downstream 689658 570530 ~ 571028 (-) True G244358
TU277369 other downstream 689772 570530 ~ 570914 (-) False G244358
TU277905 other upstream 539269 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 657741 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 2629420 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 3666429 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 3666429 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127

Expression Profile