RNA id: TCONS_00016836



Basic Information


Item Value
RNA id TCONS_00016836
length 916
lncRNA type lincRNA
GC content 0.51
exon number 6
gene id XLOC_008412
representative True

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17376367 ~ 17378063 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CCCAGCCACCGAACTAAGAGGTAGCTGGTTATTTAGCACCTCTACCGTCTGAGTTGGCTGCTTCTGTGACAACAGATCTGGCTCAAAGGAAGAGGACGCAGTAGAATAAAATCCAGCAAAATCCAGAATATGAACAACTGATACCTCATATGAAAGACCTGCCAAGCCATCGGGAAGAGAATTATATGCAAAAGGCCGATTGCTTGGACGAGGCggattcggctctgtgtttgctgggacccgcaggtctgatggacttCCAGTCACCATCAAGTATGTCTCTAAAAACAGAACACTCTGGTTGGAAGTTGTGAATTCATAAGATTATTAGTCTTGAGGTGGCTTTGATGACTCGGGTCAATACAGCTACTCACTGCCCTAATGTCGTGCAGCTCGTAGAGTGGTTTGACCGTCGCACTCGATGCATCTTGATCCTGGAGCGTCCGGTTCCCTCCaggatcagcagtttctgcaaAGACTGGATGAAATACTGGCCAAGAAAGTTCTGGTGCAGCTCATCAGCACGCCAAAACACTGCGAGAGCTGTTGggtcctgcaccgggacgtcacACCAGAGAACCTGCTGACCTAAAGCTGCTGGAGTTCGGCTGTGGAGATCTCCTAAAGCACTCAGCCTTCAGATATTTTCAGGCACTCCTCAGTACGGCCCTGATGAGTGGTTTCAGCAGCATCTGCTGGACCATCTACTGTCTGGTCAGTCGGGGTGACACTCTACTACAACATCCTCTGCGGTTGTTTTTTAGCGTCAGAGCCGCATGCAGGGTCACCTGCTAAAGCAGACTGCACTTCCCTCGAGAGCTGTCTACAGagtgccgtcagGTGATTagctggtgtctcagtgcagcgTTGGCTGATCTCACCCCAGCTTGCATGACATTGAGCACCATCCTTGGTT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154324

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00016834 lncRNA upstream 3439 17370296 ~ 17372928 (+) True XLOC_008410
TCONS_00016818 lncRNA upstream 455380 16914731 ~ 16920987 (+) True XLOC_008403
TCONS_00016805 lncRNA upstream 1330863 16035869 ~ 16045504 (+) True XLOC_008394
TCONS_00018914 lncRNA upstream 1357578 15987054 ~ 16018789 (+) False XLOC_008393
TCONS_00018915 lncRNA upstream 1369066 15987069 ~ 16007301 (+) True XLOC_008393
TCONS_00016839 lncRNA downstream 42050 17420113 ~ 17423619 (+) True XLOC_008413
TCONS_00016849 lncRNA downstream 374852 17752915 ~ 17756122 (+) False XLOC_008417
TCONS_00018916 lncRNA downstream 378406 17756469 ~ 17757994 (+) True XLOC_008417
TCONS_00018766 lncRNA downstream 508135 17886198 ~ 17923213 (+) False XLOC_008419
TCONS_00016854 lncRNA downstream 509244 17887307 ~ 17922896 (+) False XLOC_008419
TCONS_00016832 mRNA upstream 3015 17343319 ~ 17373352 (+) False XLOC_008410
TCONS_00016833 mRNA upstream 3016 17345609 ~ 17373351 (+) False XLOC_008410
TCONS_00016830 mRNA upstream 36169 17286004 ~ 17340198 (+) False XLOC_008409
TCONS_00016831 mRNA upstream 36882 17321218 ~ 17339485 (+) True XLOC_008409
TCONS_00016829 mRNA upstream 82358 17285989 ~ 17294009 (+) False XLOC_008409
TCONS_00016837 mRNA downstream 28857 17406920 ~ 17424590 (+) False XLOC_008413
TCONS_00016840 mRNA downstream 63671 17441734 ~ 17489726 (+) False XLOC_008414
TCONS_00016841 mRNA downstream 68733 17446796 ~ 17451345 (+) True XLOC_008414
TCONS_00016842 mRNA downstream 243312 17621375 ~ 17651879 (+) False XLOC_008415
TCONS_00016843 mRNA downstream 245052 17623115 ~ 17652807 (+) True XLOC_008415
TCONS_00016835 other upstream 2452 17373789 ~ 17373915 (+) True XLOC_008411
TCONS_00016824 other upstream 274699 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016813 other upstream 546491 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016809 other upstream 857284 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016791 other upstream 1974727 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016838 other downstream 28907 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016851 other downstream 377715 17755778 ~ 17756767 (+) False XLOC_008417
TCONS_00016857 other downstream 708639 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016870 other downstream 1946664 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016873 other downstream 1957604 19335667 ~ 19340004 (+) True XLOC_008431

Expression Profile


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