Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016838 |
| length | 766 |
| RNA type | processed_transcript |
| GC content | 0.49 |
| exon number | 7 |
| gene id | XLOC_008413 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 17406920 ~ 17424590 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2038 | Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in TOR signaling and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation and signal transduction. Predicted to be located in ribosome. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS6KB1 (ribosomal protein S6 kinase B1). |
| ensembl_id | ENSDART00000145216 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00016836 | lncRNA | upstream | 28907 | 17376367 ~ 17378063 (+) | True | XLOC_008412 |
| TCONS_00016834 | lncRNA | upstream | 34042 | 17370296 ~ 17372928 (+) | True | XLOC_008410 |
| TCONS_00016818 | lncRNA | upstream | 485983 | 16914731 ~ 16920987 (+) | True | XLOC_008403 |
| TCONS_00016805 | lncRNA | upstream | 1361466 | 16035869 ~ 16045504 (+) | True | XLOC_008394 |
| TCONS_00018914 | lncRNA | upstream | 1388181 | 15987054 ~ 16018789 (+) | False | XLOC_008393 |
| TCONS_00016839 | lncRNA | downstream | 3506 | 17420113 ~ 17423619 (+) | True | XLOC_008413 |
| TCONS_00016849 | lncRNA | downstream | 336308 | 17752915 ~ 17756122 (+) | False | XLOC_008417 |
| TCONS_00018916 | lncRNA | downstream | 339862 | 17756469 ~ 17757994 (+) | True | XLOC_008417 |
| TCONS_00018766 | lncRNA | downstream | 469591 | 17886198 ~ 17923213 (+) | False | XLOC_008419 |
| TCONS_00016854 | lncRNA | downstream | 470700 | 17887307 ~ 17922896 (+) | False | XLOC_008419 |
| TCONS_00016832 | mRNA | upstream | 33618 | 17343319 ~ 17373352 (+) | False | XLOC_008410 |
| TCONS_00016833 | mRNA | upstream | 33619 | 17345609 ~ 17373351 (+) | False | XLOC_008410 |
| TCONS_00016830 | mRNA | upstream | 66772 | 17286004 ~ 17340198 (+) | False | XLOC_008409 |
| TCONS_00016831 | mRNA | upstream | 67485 | 17321218 ~ 17339485 (+) | True | XLOC_008409 |
| TCONS_00016829 | mRNA | upstream | 112961 | 17285989 ~ 17294009 (+) | False | XLOC_008409 |
| TCONS_00016840 | mRNA | downstream | 25127 | 17441734 ~ 17489726 (+) | False | XLOC_008414 |
| TCONS_00016841 | mRNA | downstream | 30189 | 17446796 ~ 17451345 (+) | True | XLOC_008414 |
| TCONS_00016842 | mRNA | downstream | 204768 | 17621375 ~ 17651879 (+) | False | XLOC_008415 |
| TCONS_00016843 | mRNA | downstream | 206508 | 17623115 ~ 17652807 (+) | True | XLOC_008415 |
| TCONS_00016845 | mRNA | downstream | 305447 | 17722054 ~ 17747776 (+) | False | XLOC_008416 |
| TCONS_00016835 | other | upstream | 33055 | 17373789 ~ 17373915 (+) | True | XLOC_008411 |
| TCONS_00016824 | other | upstream | 305302 | 17100477 ~ 17101668 (+) | False | XLOC_008406 |
| TCONS_00016813 | other | upstream | 577094 | 16829762 ~ 16829876 (+) | True | XLOC_008400 |
| TCONS_00016809 | other | upstream | 887887 | 16518967 ~ 16519083 (+) | True | XLOC_008398 |
| TCONS_00016791 | other | upstream | 2005330 | 15394242 ~ 15401640 (+) | True | XLOC_008381 |
| TCONS_00016851 | other | downstream | 339171 | 17755778 ~ 17756767 (+) | False | XLOC_008417 |
| TCONS_00016857 | other | downstream | 670095 | 18086702 ~ 18086816 (+) | True | XLOC_008420 |
| TCONS_00016870 | other | downstream | 1908120 | 19324727 ~ 19329943 (+) | False | XLOC_008430 |
| TCONS_00016873 | other | downstream | 1919060 | 19335667 ~ 19340004 (+) | True | XLOC_008431 |
| TCONS_00016899 | other | downstream | 2573516 | 19990123 ~ 19998775 (+) | False | XLOC_008443 |
