RNA id: TCONS_00016841


Basic Information

Item Value
RNA id TCONS_00016841
length 530
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_008414
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17441734 ~ 17489726 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTATAGTGGACACTCTGAAGACAGCCTTCCCTCGCTCAGAACCACAAAGCCCTACTGACGACATTGACGGAGAGCCTGATGGAAAACTGTCCACTGACAAGAAGTCCAAGTCTAGAATGAGGTTCTCTAGTAAAATCGCACCTGCTCTCAGCGTGTCTGACATGAAACCCAACGTGGTTTACTGCTTTGATGAAAGCAGCACTgttttcaATGGCTTCTTGTTGAACGAGCTGGAGAGCTTCATCTCAGAGAAGGAGCGTTCTGAAGGTAAAGCTCCAGGGTTTGATGCTGATGCCGAGAAAAGTGTAGGCTCCGGACCTAAATTGGATTTGAAAACCTGTATGTGTGCCAGACCACAGCTGGAGAATGCACCTTCCTTCAGTGAATCTGGTAAATACTTTTGTCTGAGGAGACGGCTCTATCTAACCAGACTCTGAATATCCTGTGCATGCTAATGAAGAATCAGTGGAGCTGGCTTTGCACAGAAAACATCCAGAAGACCATCAGAATGCTGTTTGGGACCCTCCTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6331 Predicted to enable phosphatidylinositol binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SNX19 (sorting nexin 19).

Ensembl:

ensembl_id ENSDART00000157189

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016839 lncRNA upstream 23177 17420113 ~ 17423619 (+) True XLOC_008413
TCONS_00016836 lncRNA upstream 68733 17376367 ~ 17378063 (+) True XLOC_008412
TCONS_00016834 lncRNA upstream 73868 17370296 ~ 17372928 (+) True XLOC_008410
TCONS_00016818 lncRNA upstream 525809 16914731 ~ 16920987 (+) True XLOC_008403
TCONS_00016805 lncRNA upstream 1401292 16035869 ~ 16045504 (+) True XLOC_008394
TCONS_00016849 lncRNA downstream 301570 17752915 ~ 17756122 (+) False XLOC_008417
TCONS_00018916 lncRNA downstream 305124 17756469 ~ 17757994 (+) True XLOC_008417
TCONS_00018766 lncRNA downstream 434853 17886198 ~ 17923213 (+) False XLOC_008419
TCONS_00016854 lncRNA downstream 435962 17887307 ~ 17922896 (+) False XLOC_008419
TCONS_00018767 lncRNA downstream 436003 17887348 ~ 17923627 (+) False XLOC_008419
TCONS_00016837 mRNA upstream 22206 17406920 ~ 17424590 (+) False XLOC_008413
TCONS_00016832 mRNA upstream 73444 17343319 ~ 17373352 (+) False XLOC_008410
TCONS_00016833 mRNA upstream 73445 17345609 ~ 17373351 (+) False XLOC_008410
TCONS_00016830 mRNA upstream 106598 17286004 ~ 17340198 (+) False XLOC_008409
TCONS_00016842 mRNA downstream 170030 17621375 ~ 17651879 (+) False XLOC_008415
TCONS_00016843 mRNA downstream 171770 17623115 ~ 17652807 (+) True XLOC_008415
TCONS_00016845 mRNA downstream 270709 17722054 ~ 17747776 (+) False XLOC_008416
TCONS_00016844 mRNA downstream 270709 17722054 ~ 17747776 (+) False XLOC_008416
TCONS_00016846 mRNA downstream 276835 17728180 ~ 17748319 (+) False XLOC_008416
TCONS_00016838 other upstream 30189 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016835 other upstream 72881 17373789 ~ 17373915 (+) True XLOC_008411
TCONS_00016824 other upstream 345128 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016813 other upstream 616920 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016809 other upstream 927713 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016851 other downstream 304433 17755778 ~ 17756767 (+) False XLOC_008417
TCONS_00016857 other downstream 635357 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016870 other downstream 1873382 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016873 other downstream 1884322 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016899 other downstream 2538778 19990123 ~ 19998775 (+) False XLOC_008443

Expression Profile

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