RNA id: CI01000057_02838008_02838430.mRNA



Basic Information


Item Value
RNA id CI01000057_02838008_02838430.mRNA
length 1541
RNA type mRNA
GC content 0.38
exon number 2
gene id CI01000057_02838008_02838430
representative False

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2836677 ~ 2838785 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCGTGTGTTGGAGCAAAGGAAGAGAGAGCAGATGATTAAACAGAGAAAGCAGGAGGAGGAAGCCAGGAGGAAAATATCTCCACTGGAACAGGAGCTTCTCAAGAGACAACAGAAACTAGAGGAGCTGGAGAAGGAGCAAGCAAGACTGGAGGAAAGCAACTGCAGCGCCCCGGAGTTCATCAAAGTGAAGGAAAACCTGAGACGAACATCGTTTACAAGTTCTGGAGAGAAGGAGGTGTAGGGACACAGACTGGATGTGTGTATTTGTGCACAGCCAGTAACATAGAGACCTGCTGCAGCTCCTAAACACCACCCACATGACTGAGCTTCTCTACTTCCTGTCTCACACCAACAACACCTTCACCGCTCCCTGTAGCAGGTTTAGAGAGGGTCGAGATAAGGACAAGACCCAAAGGGCCTCTGCTACACCTTCACGTCACGAAGAGGTTGATGCTCGAGAGGTTTAGGAGACTGCAGAGAGAAAGAGAGTGTTGTTTTTTCTGCTCCGGATGGGACCTGATGGGTTAAAGTTTAACTGTTCAGGCTGCTTATGAGTTTGTGTTTATGCATGGATGGACAGCTATGTTCTGGTTCTGTCACATTAGATGAAAAAGTGAAAACAAGGTACAAGGAGTAGTTTCAGAAGTTTATAAACAGTCTGTTGCTCTCTAACCGAAAGGCAGAACATTTATAAGGCGACAACTAGACAAACATATCAGTATTACAGACAAATTATTGCTTATTGCTTACCAAACCGCCAAATATTTGTTCATTGCCTACTTTTAAATATTGTCTCTTATACTTAACAATCAGCACTTGTCACTTTTAAATGAAGATATAACAACTACTATTATTTTCAGCCTTCATCACCCTTGATTTTAAGACAACCAGTAAACATTGATCATTACTACAATGATGGCTAAAATGATGATGCACCATTACATGAAGCTAACTATTTAATTCGGCACATCAGAGAGTTAATCCTGTGTAAAAATAGAGAAGTTGTCTAGTTTGTGCTTATTCCAGTGCCTTTGTTTAAGTATTGCAACAGTATGGGTTGCCTGACTGTTAATGTGGTTCAATGTATGTTGCACAGAATTTTGTTCATATAGTCTTATCTTTATGAAATGTTCCATAATATGGCTGCGTATCAGAAAAAGTGACATTTCTTTCAACTTATTTGCTGCTTACAAATGAGAAATAGAGCATAAAGCACTAATGGCTGAAACCGTTTCAGAACTGAAAGGTATTTTTAAAGTGCTATATCATATGATTTATTTGATTTTATTTTTTTTAATTTTGTTGAAGTCATGTTTCCATTTTTTCCCCCATACTGTTTTAGATCGTTTGGGCTTTTAAAGCACAAAGTAAAATTGAAATAATATGTAATTGCTGCCTTTTCTGGCCCCTAAAGCCATTTGGATAATACAACAATCAATTTGTTACTACAATTCAATGTTAATTTACTTATAAAAAATATATAAGGGTAGGCTACTTATGTTTTTTGTAGCTTTAGCCATGACCTTTTGATTGTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU278170 lncRNA downstream 148844 2687650 ~ 2687865 (-) True G245035
TU278169 lncRNA downstream 149609 2686859 ~ 2687100 (-) True G245034
TU278158 lncRNA downstream 240192 2596206 ~ 2596517 (-) True G245024
TU278150 lncRNA downstream 259477 2576996 ~ 2577232 (-) True G245016
TU278149 lncRNA downstream 259820 2576453 ~ 2576889 (-) True G245015
TU278208 lncRNA upstream 12358 2850820 ~ 2869408 (-) True G245069
TU278269 lncRNA upstream 64603 2903065 ~ 2903273 (-) True G245130
TU279228 lncRNA upstream 152530 2990992 ~ 2991334 (-) True G245996
TU279195 lncRNA upstream 174801 3013263 ~ 3322256 (-) True G245966
TU279366 lncRNA upstream 514970 3353432 ~ 3356706 (-) True G246132
CI01000057_02829879_02834139.mRNA mRNA downstream 2447 2829834 ~ 2834262 (-) True CI01000057_02829879_02834139
CI01000057_02807951_02821617.mRNA mRNA downstream 14916 2807766 ~ 2821793 (-) True CI01000057_02807951_02821617
CI01000057_02710209_02720000.mRNA mRNA downstream 115134 2710164 ~ 2721575 (-) True CI01000057_02710209_02720000
CI01000057_02701515_02705729.mRNA mRNA downstream 130980 2700883 ~ 2705729 (-) True CI01000057_02701515_02705729
CI01000057_02656843_02688559.mRNA mRNA downstream 147177 2656843 ~ 2689532 (-) True CI01000057_02656843_02688559
CI01000057_02844117_02844398.mRNA mRNA upstream 5329 2843791 ~ 2846738 (-) True CI01000057_02844117_02844398
CI01000057_03027103_03027612.mRNA mRNA upstream 188618 3027080 ~ 3027851 (-) True CI01000057_03027103_03027612
CI01000057_03192667_03213688.mRNA mRNA upstream 354040 3192502 ~ 3213869 (-) True CI01000057_03192667_03213688
CI01000057_03345268_03367172.mRNA mRNA upstream 506284 3344746 ~ 3368010 (-) True CI01000057_03345268_03367172
CI01000057_03428989_03429249.mRNA mRNA upstream 590210 3428672 ~ 3430374 (-) True CI01000057_03428989_03429249
TU277965 other downstream 915288 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 1031556 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 2265681 570530 ~ 571028 (-) True G244358
TU277369 other downstream 2265795 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1053273 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2090282 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2090282 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 2372648 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3085078 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile