RNA id: CI01000057_03345268_03367172.mRNA


Basic Information

Item Value
RNA id CI01000057_03345268_03367172.mRNA
length 2587
RNA type mRNA
GC content 0.40
exon number 6
gene id CI01000057_03345268_03367172
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3344746 ~ 3368010 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTAATGGAGCAGAACAAGGAAGGACTGATTAGGAGAGGACGCAAATATCTCTCCTGCAACAGCCCTCCATCTTCCCACCATTCCATTTCCGTCCTCCAATTCCAACATTTTTGGGCAAATTTACGCAGACTGCAAAGAGGGAGAACTTGTCAACGTAGGGCTGGGCGTATGTGTATAACGTGCAACAGTAGATGCGTGTCAACCAGTAGAGAGTTTGCTATACCACTATTATTTTATTATTTAAATATTATTTTATAAAATTTATGTAAAATACTATTTAAATAAAACTATTATAACAGTAATTTAAATAAAAAATATACTGTTAATGCCATTAATAAATACAGTTTATTATTTAAATACATGTTTTTTTTTAAATAAAAAAGTTAAAAATAAATAAAGAAATATTTAAACATATATATATATATATATATATATATATATAGCTAAGGCTTTTAAGGCTTTTGTTTTTAACAAGTGCTTTTTTTATTCCTTTTATGAATATTCTTATCGTTTGGTTGCATCATGTTCTGAATAAAAAAAAAAGAAAATAAATTATTGAGATGAAGTACCTTTCATTTGTATTCACTGGATTACCCAAAACAAGCATTACCACATGGGTATTAAAATGCATTTTTTCATTGGATTTCCAGCAATAATAACAATATTGTGACATATACTGTTACCATGATATAAAATTACTCATAACATGATAAGATGTTGGTACCCTTACTACAACATGAGGAAATTCAAACCCTTATTTTACAGTAATAGCGGGTGTACTTCAAGGTGACCGCCAGCTAGCTGCCCGTGACAAAACAAACACTTTGTAAAGATGTGATGGCATGTGATACGGAAGGAGGAAAGGGAATGAGAGATGGAGAAATCTGTCCTGCGGTGAGACCGGAGGGTGGCAGCTCCTCTTTGACATGTGTTGGGAAACTGGCACAGCGGGAACAAGCCTCAAATGCACAGAGGAGGGCGAGAGGGCACAGAGGCAAGAGAAAGAGAGAAAGGAGGTACGCCAGATGGCATCCGAGAACTTTCTCAAACACTTTTTTCTTGCCAAGGGGAGTGGGCTTCTGTTGTGAAAGGTGCCACAGGGCACAGAGCATGTCCGTGGCAACACAGGAGTCACAACCCAAGCCAGGCGTTGCTGGAAGTCCACAGGAGTGTGAGAGTGTGTGTGAGAAACACACCATATGGATGCGTGCACCTGCAGAGAGGATCAGAACACAGCAGAAAGTTAGAGAAAGAAAAAAGTATATCAAAATCAGGCTATATACTGTATATTGTACGGCTGCCAACTTTCTACTTCCAAAACATGAGACCGGTAGTGGAATGTCACAGAAGTTGATATGCAGTTATGTACGGTCGGCCATTAGCGCAAAATACGCGTTCAAAAGGACACAAAGTCTTGCAGCTATTTCTCTGATCACTTTATTTTGCCAGAGGAAATCTAAAGGCTTGTCAATCATCGTAAAAGCTGCTCTTGAGAAGATCACACGCTCTCACGGCGCTCGTGGAATCACATGCATGAGTGTGCGTGCATCTAATGAGGGCTTTTTACAGCTGCCAATGGCCAAACTTTTTTTTTTTTTTGTGCCAACAGGCAACACAAACTCAAGCCGACCAGATGATAAGGTAGCCCTATCCAAACTAAGCCAAGATCTATCTGAGATGAGCAGGCAATGTGGCTTAAGGACTCATATCTGCTCAGCTTTCAGCGTCTTCGCTGGGCCCGCGAGCGCTTTGTGGCTGACCGTCCCGCTCGTCGGCCGGCAGGAAGAGATAATGAAAATCAGAGATAAAGACGATAAGTCTGAAATGGCGGCAGTCGTTTTTGAACGGAGAGCTCAATCCAGCCCAGACAAGCAGATTAGGAATGACATTTGTCTGCTTGGATTGATAACTACATCTATGCCAGCGAGGCTTACAGAAAGGGGCCGGACAGATTATGTCAACATCCAAAGGCATATCATGTTGGTGGAGAAAAGGATCGACAGAGCGTGTCTATCAAAAAACCCATCCAAAACCAGAATAGAACACGGAATTGAATTGAAGTGATAGCGATTCGAGAAATTCAGGCGAGTACCTGCATTTTGCAGGTGTGTACAGTGAAGCGTGACTCATATCTCAGAGATGCTAAAAATACACAGCCTATGCATTTACACCACGGGCACGGGCACCCCAGCTCAGATGCTGTGACGGAGGACGGGTTTTCATGTCACAACAACATATGTAGCTGGATTCAGCTGGCTACAAGACATAAGTCAACGTACCCTTCATGCTGACCCCTAGTAGAAATACTGTAGCAGTACCAGCAACGCTATCAGAAGATAATACACTTTTTTTTTTTTTAAAGAATGCTGTTACATGTCCAAAACATCAAGGTATCAGCATAAAATATGTCCAACACAGTTTCATGGGAACTTGTACAATTGAGTTGTAAGATATTGTACAAATTGGCTTATGTGAAAAGTTATATACATTGAATTCAGTGTGATTGAATTCACCCTATATATACTGTATATATTATGACATTGCATACAAATAACTATGACTTCTCATGAGGTGATGTCCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279195 lncRNA downstream 22490 3013263 ~ 3322256 (-) True G245966
TU279228 lncRNA downstream 353412 2990992 ~ 2991334 (-) True G245996
TU278269 lncRNA downstream 441473 2903065 ~ 2903273 (-) True G245130
TU278208 lncRNA downstream 475338 2850820 ~ 2869408 (-) True G245069
TU278205 lncRNA downstream 495374 2849172 ~ 2849372 (-) True G245067
TU279205 lncRNA upstream 222782 3590792 ~ 3591597 (-) True G245973
TU279483 lncRNA upstream 227335 3595345 ~ 3595637 (-) True G246248
TU279197 lncRNA upstream 232593 3600603 ~ 3603196 (-) True G245967
TU279485 lncRNA upstream 236440 3604450 ~ 3604680 (-) True G246250
TU279486 lncRNA upstream 237608 3605618 ~ 3605857 (-) True G246251
CI01000057_03192667_03213688.mRNA mRNA downstream 130877 3192502 ~ 3213869 (-) True CI01000057_03192667_03213688
CI01000057_03027103_03027612.mRNA mRNA downstream 316895 3027080 ~ 3027851 (-) True CI01000057_03027103_03027612
CI01000057_02844117_02844398.mRNA mRNA downstream 498008 2843791 ~ 2846738 (-) True CI01000057_02844117_02844398
CI01000057_02838008_02838430.mRNA mRNA downstream 506284 2836709 ~ 2838462 (-) False CI01000057_02838008_02838430
CI01000057_02829879_02834139.mRNA mRNA downstream 510484 2829834 ~ 2834262 (-) True CI01000057_02829879_02834139
CI01000057_03428989_03429249.mRNA mRNA upstream 60662 3428672 ~ 3430374 (-) True CI01000057_03428989_03429249
CI01000057_03629306_03634635.mRNA mRNA upstream 260916 3628926 ~ 3634635 (-) False CI01000057_03629306_03634635
CI01000057_03847471_03851892.mRNA mRNA upstream 479295 3847305 ~ 3852121 (-) True CI01000057_03847471_03851892
CI01000057_03887278_03892054.mRNA mRNA upstream 519193 3887203 ~ 3892054 (-) False CI01000057_03887278_03892054
CI01000057_03903266_03927695.mRNA mRNA upstream 534139 3902149 ~ 3927695 (-) True CI01000057_03903266_03927695
TU277965 other downstream 1423325 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 1539593 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 2773718 570530 ~ 571028 (-) True G244358
TU277369 other downstream 2773832 570530 ~ 570914 (-) False G244358
TU279491 other upstream 523725 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 1560734 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 1560734 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 1843100 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 2555530 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile