RNA id: CI01000057_03428989_03429249.mRNA



Basic Information


Item Value
RNA id CI01000057_03428989_03429249.mRNA
length 1703
RNA type mRNA
GC content 0.38
exon number 1
gene id CI01000057_03428989_03429249
representative True

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3428672 ~ 3430374 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATTCTAAAGATCCACAATGAAACTAACAATCTGATGAGAAATGCAGCCAAAATCGCTCATGGAGATATTGGTAGGAGCTCCGCAGAGAAATGGCCTTTAAAATCTACTTTCCTCTTCATTTTGTGGTCTATAAACTACGTCTGGCCTTGGGCGATATTAATTAGGTTCCTGTTATTAAGCAGTTGGAGGAGAAGGAGAAAGTACAAGACAATATTTCTTGGAGTAATTAGCGGACGTGTATAGTGGACTAGAGAGTGGGTCAGATTATTGAAGTTCATGTTTTTATAAAGTATGTATTTGAGGTCGGATTAGGGCAGAGGGACTTCCTAACAAAAGATTAGACCATCTAGACCAGGGTTTTTCCAGGGGTTGCCAAGGACCCCCAAATAATATGATACCCCTTTCTAAAATATAAAAATACACGTTCACATACAAAGGCCTATTTATACAGATTAAGAAAAACATTGCAGTGTAATATTTTAAAGAAAACATGTCTGAATTACATAATTAGCTTTAATATTGTCAATGTACTAAAGGCAAATAAAAATTTGGAAAATATATATAAAATAATATTCTCTTCCCCTTTCTTGCTTAATAAAGTGATAGAAAATTCTGTCATCATTTTCTCACCCTTAAGTTGTTTTAAACCTGTATGAATTTCTTCTGCTGAACAGAAAATAAGACATTTTGAAGAATGTCGGTAACCAGACAGTTGATGGGCCCCACTGACTTCCATAGTATACTTTTTTTTTCTTTTTTTTCCAATACTATGGAAGTCAATGGGGCCCATCAACTGTTTGATTACCCATATTCTTCAAAATATCTTCTTTTGTGTTCAGATGAAGAAAGAAGTTCATACAGGGTTGGAAAAATTTGAGGGTGAGTAAATGATGACAGAATTTTCATTTTTGGATGAACTATCCCTTTAATTCATATTTTTAGATCATTTTATAATGCAAAGTGTGGTTCACACATCTGTGTAAAACATTTTACCATACTTTAATATACCATACCATTACCATACTTAATTCCACAGATTTTCCCTCAAAACCAGTGCAAAAAGTGCTAAAAATATGCATATTCCATGTGAACCCAGCTAACAACATAAACCATCCACACAGAAATGAAAATAGACCTCCGCTGGTTGGAGTTTAGCTGGAACTGTCTTCATTCAGAGCAAGTGGTGTTGCAATGCCCTGCAGACCCCATGGTGCCTCCCATCCTGCCTTTGATCGGCATCGCCATCCGTCCACCACCAATTACCGACATTTTTTACATCCCATTTGCATACATTAGCAAACAGCGTGCATATTCACGAGATGTAGATGAACCCTGCCGACTGGCTCCAGGGGCGTTGCCTCCTGTCGAACGTATTGCAATTTAATACTCGTTTACTAGTAAAAGCTGGAGCCACACACGAAGACTGGAAGGGAGGGGGGTAAAGTGGGGTAGTTGAAATGAAATGGCCTCCTTTTACAGGATGGCTTTGAGGAGCAAATGATGCGTCTTTTCTTTCTTGTGTACGAGCGGCTCTTTAACGCAGGTAATTAGACCGGAGTTAGATTAAGCCACACAATGGAACAGAAATAAGAGAAGTGCAATAGGTTTACCCTCGCTGCATTCCACTCTTTTACTATACTGACAGAAATCAATAGACACTCATGTAATGCACTTCACAGCAGATAAAGGGTGAACAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU279371 lncRNA downstream 31467 3361699 ~ 3397205 (-) True G246136
TU279366 lncRNA downstream 71966 3353432 ~ 3356706 (-) True G246132
TU279195 lncRNA downstream 106416 3013263 ~ 3322256 (-) True G245966
TU279228 lncRNA downstream 437338 2990992 ~ 2991334 (-) True G245996
TU278269 lncRNA downstream 525399 2903065 ~ 2903273 (-) True G245130
TU279205 lncRNA upstream 160418 3590792 ~ 3591597 (-) True G245973
TU279483 lncRNA upstream 164971 3595345 ~ 3595637 (-) True G246248
TU279197 lncRNA upstream 170229 3600603 ~ 3603196 (-) True G245967
TU279485 lncRNA upstream 174076 3604450 ~ 3604680 (-) True G246250
TU279486 lncRNA upstream 175244 3605618 ~ 3605857 (-) True G246251
CI01000057_03345268_03367172.mRNA mRNA downstream 60662 3344746 ~ 3368010 (-) True CI01000057_03345268_03367172
CI01000057_03192667_03213688.mRNA mRNA downstream 214803 3192502 ~ 3213869 (-) True CI01000057_03192667_03213688
CI01000057_03027103_03027612.mRNA mRNA downstream 400821 3027080 ~ 3027851 (-) True CI01000057_03027103_03027612
CI01000057_02844117_02844398.mRNA mRNA downstream 581934 2843791 ~ 2846738 (-) True CI01000057_02844117_02844398
CI01000057_02838008_02838430.mRNA mRNA downstream 590210 2836709 ~ 2838462 (-) False CI01000057_02838008_02838430
CI01000057_03629306_03634635.mRNA mRNA upstream 198552 3628926 ~ 3634635 (-) False CI01000057_03629306_03634635
CI01000057_03847471_03851892.mRNA mRNA upstream 416931 3847305 ~ 3852121 (-) True CI01000057_03847471_03851892
CI01000057_03887278_03892054.mRNA mRNA upstream 456829 3887203 ~ 3892054 (-) False CI01000057_03887278_03892054
CI01000057_03903266_03927695.mRNA mRNA upstream 471775 3902149 ~ 3927695 (-) True CI01000057_03903266_03927695
CI01000057_03964894_03967760.mRNA mRNA upstream 534081 3964455 ~ 3968737 (-) True CI01000057_03964894_03967760
TU277965 other downstream 1507251 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 1623519 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 2857644 570530 ~ 571028 (-) True G244358
TU277369 other downstream 2857758 570530 ~ 570914 (-) False G244358
TU279491 other upstream 461361 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 1498370 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 1498370 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 1780736 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 2493166 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile