RNA id: TU279999


Basic Information

Item Value
RNA id TU279999
length 753
RNA type TUCP
GC content 0.49
exon number 4
gene id CI01000057_04927533_04931127
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4927533 ~ 4931420 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTACTAACTAACTCAACCAGGCCCCGCCCCTTTATTCTGCGTATGAATTATTTAAATGAGGAATATTGTGAAGAAAACTCAAGATGTAGGCGTTTCAGAAACACTGACACTGATATAGAGAAGAACTCTTTGGAACTTTACAGAGCTTTTTCATGATCAAACAGAAACATCAAACGCTAAAGAGAGATGAACATGGAAAAATCACAATAGGTGCTTTTTAATATTACTTACTTGACAGTAAAAGAAGGTGTAACCCGGATGTTATCAGCAGATGTGTTTGCATGTGATGCAGGACTTGATGCAGCAGTTGCTATGTGGTTTGGCGTTCTTGCACTCGAATCGGGTTCTCCATCGGGATCTGAAGCCGGAAAACATCCTGGTGACCAGCAGAGGGCAGGTGAAACTGGCCGACTTTGGTTTGGCGCGGATCTACAGCTGCCACATGGCGCTCACACCAGTGGTTGTGACGTTGTGGTATCGCTCTCCTGAAGTGCTGCTCCAGACCACATACGCCACACCTGTGGACATCTGGAGCACCGGCTGCATCTTCGCTGAGATGTTCAGACGCACACCGCTCTTCTGTGGAGATTCAGAGGTGGACCAGCTGGGGAAGATTTTTGCGGTGATCGGCCTGCCGTCTGAAGACGAGTGGCCGACTGATGTCACTCTGTCCCGTCAGAACTTCAGCCCTCAAAACCCTCAGCCAATCACAGACTGTGTTCCTGAGATCAGCGAGAAGGGGGCGAAGCTCT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K02089 CDK4; cyclin-dependent kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279958 lncRNA downstream 10034 4913188 ~ 4918710 (-) True G246681
TU279982 lncRNA downstream 65562 4862804 ~ 4863182 (-) True G246703
TU279970 lncRNA downstream 124365 4801672 ~ 4804379 (-) True G246691
TU279952 lncRNA downstream 147692 4780766 ~ 4781052 (-) True G246676
TU279945 lncRNA downstream 178603 4749815 ~ 4750141 (-) True G246669
TU279959 lncRNA upstream 5531 4936951 ~ 4937172 (-) False G246682
TU279960 lncRNA upstream 5531 4936951 ~ 4937160 (-) True G246682
TU280035 lncRNA upstream 13978 4945398 ~ 4945752 (-) True G246750
TU280036 lncRNA upstream 14967 4946387 ~ 4946622 (-) True G246751
TU280040 lncRNA upstream 18133 4949553 ~ 4952336 (-) True G246753
CI01000057_04916382_04926437.mRNA mRNA downstream 2307 4916382 ~ 4926437 (-) False CI01000057_04916382_04926437
CI01000057_04891502_04906844.mRNA mRNA downstream 21900 4890235 ~ 4906844 (-) True CI01000057_04891502_04906844
CI01000057_04866089_04878847.mRNA mRNA downstream 49897 4866089 ~ 4878847 (-) True CI01000057_04866089_04878847
CI01000057_04861618_04865902.mRNA mRNA downstream 62842 4861618 ~ 4865902 (-) True CI01000057_04861618_04865902
CI01000057_04794580_04834143.mRNA mRNA downstream 94315 4793517 ~ 4834429 (-) True CI01000057_04794580_04834143
CI01000057_05163258_05169859.mRNA mRNA upstream 231220 5162640 ~ 5170119 (-) True CI01000057_05163258_05169859
CI01000057_05442832_05459768.mRNA mRNA upstream 511364 5442784 ~ 5459768 (-) True CI01000057_05442832_05459768
CI01000057_05464070_05466835.mRNA mRNA upstream 532620 5464040 ~ 5469344 (-) True CI01000057_05464070_05466835
CI01000057_05486207_05495209.mRNA mRNA upstream 554620 5486040 ~ 5495657 (-) True CI01000057_05486207_05495209
CI01000057_05553430_05562372.mRNA mRNA upstream 620138 5551558 ~ 5562448 (-) True CI01000057_05553430_05562372
TU279491 other downstream 1031053 3895949 ~ 3897691 (-) True G246256
TU277965 other downstream 3007323 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 3123591 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 4357716 570530 ~ 571028 (-) True G244358
TU277369 other downstream 4357830 570530 ~ 570914 (-) False G244358
TU280085 other upstream 279690 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 992120 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile