RNA id: CI01000057_05464070_05466835.mRNA


Basic Information

Item Value
RNA id CI01000057_05464070_05466835.mRNA
length 2890
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000057_05464070_05466835
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5464040 ~ 5469344 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTATATTGATAGATTTGTGTGAGAAATGAACCCATAATTTAGTCATTCACTGAAAACCAGTGAAATGTCATTGTCATGTGACCAAATGAAATTGACATCAAAACTGGTTCCACATTTGAATTGAGAGCTAAAAATTAACTTTATATAATTAAATAGGGATTTGGACAGTTTGAGTGTGCTGTTGATGAACGTTGATAAAGCGATGTTTAGCAGGTTTATGAGGTGACAGACTCATAAAATATAAAATTGCTCTCATTTCCTTCCAACGAAGCTCACTTGAACACACTTCACAGCGTGACTCCTGAACTCTGGAGTAGGAGCGTAGTAGATTTGACTGCTTCCCTGAGCAGCTGTTCACTTCGCTCCTGTCAGAGCGTACAGTATTTTATGTCCCTCAAATACCTGAACACAATGGATCACGCCGCTCTCTGAATGGCCGCTCTGTTCAGCCTCGGCCGGGCCGTTGTGTGTCGAGTGTGTGAAATATGAGACAATGCCTCCTCAAACCCAGTGAGAACCATTTTCCTTTGGTTTTGAGCGAGTCAGAGTGAAGACGAGAGAGGTAACCAGTGAAAAGACCTTTAATCCCCGGCTGGAGAGGACGCTGTGGGGACGAGAGGGAGGTCGATGCAAATGAACGGCGCGGCTTTGAATAACTCCTTCAGCTCTCCAGGAATTCTTGGGAATCCAGCGGTCTGTTAAAGGTTAACTGGCTGTAAAGTTTCAAGCGTTTGCTAGTGTGCTACTGATCCAGTTAGGGGGGGAGTGGGGTAAGATGTGCCGCTCTTTTGCTTTAAGTTGAGAATGAGGAAGAGGTAAAACTAACCATCTGAATGATGTCAAAAGCGTCGTTAACATGCAGACTTTCTGTGGACAAGTTGAATCATTGTAAATGATTAATGAATGATTTATATTCCAAATAACATTTATGAAAGAAAAAACAGATCTAAGCAATCTTCCATGCCAAAGTCTCATTGTGCAGCCAGGAAGAAAGTTTAATATCAACCAAACTTTGGAAACTTCCCCGGCTAAAATCATATAATTTTTTTTTTTTTTTTGTGAAGAAAGCCAAAATATTAAATGAATATTTATGGAGTAATCCACTATTTTGTAGAGGGGGGGCAGAAGAATGACAGTTTCACCTGATATTTGGTGGAGAAAATGACTTTAGAAAGATGGCAGCATCATTATTTTATTTTAGAGAATTTATCAGTAAATTCTGTTGTCTTTTGCAATCCTTCTTGCATTATATACCAGTGGAGACTGTTCAAAAATGGGGAAAAAGCATTTTCGTGTTGTTTTCCCCCTAGAGTTGGCATGCCTGTAACTCAAGATGCCGTCTTAATATCCTTTTAGATTATATATTTAGAAATACGAGCTCTAATCTCCACGTTTGAGCCAGAAAATAACACGGTTGTTATTCTAATAACATTTGGAAATCAGTATATCTAGATTTTACTCATTTAGCACCAGTCCTGTTTAAGTGTGACATTTGTTTTCAGCTCGTGAATCAGTTTAAGTCACCAGCTCTTGCTGCACATAACACCTGACACCACCAGAGGGGAGCAGAGTGTCATTAGAATTCACTTTAGTCGGTTTCATGTGGTCTTGAGTTTAGTTCTATATTAAATGCACGTTTTGTTCTGTGTTGTGTATATTTTATAATATTAATAGTAAGTGACTTTTATTGTGCCAATAGTATATTGGATAAAAATTACAATATTGTTAATTTAAGATTTAATACAGGAGTGGATCGATAAAGAGTTGTCTTCATTTTTAGGAAAGGTTTGAATCCAGAGATATTCCTCCTGTGAATGTTGTTTTATACTTATAGTAACTATTTTAAGATTATAACCTTAGTAGCTACTAGTTTACATTAGACTAGTACTTACTAGTAGAATGATTACAATAATAAAAGCTTCTTAATGAGTAGTAAAAATGGCTATTCAGAAACAAATCTTACAAGAAACATCTGGAACTCCATGGAATTAAGTCGTAGTGCTGAAATAGTTACTTAAAAAAATGTTAAAAATGACTTTCCATAGTAACTTTTCTTTGTTTTGTACATTTCTTTTCCTCTACTATACTCCTCCCCCATTACATGTACCGATTCCCATGCGTTTGGGAGGGGGAAATTCTCGCGGGATTTGGCGAGCGTGCCCAGTGTGAGGAGGAGGCGCGCACAGAGGAGCGCGAGAGCGCGCATCGGACTCATAGCGATCATAGGCTGCGTGTCAGTGCAGTCGACTTACAGCGGGCTGTGAGGAGAACTGGCGCGACCCCTTTGTCCTTAAATACAACTCTTCTCACACGCTAAAACTTCTTAAAGTTTCTTTAAACTCGCGTTAGAGTACTTCTACTCGTTAGGTACTCAAGCAGGTTGGGTTAAACTAGTTATTTTCGCTCTGTTTGAAGTTAAAGGCTGGGCCTTTACACGCGCTCCTGACGAGAGAAAAAGAGAAGCTGCTCTTTCTGCGACTAAAAAGTCCATAAATGCTTTTTACCAAAATGGACCTGTTGAACTACCAGTACTTGGACAAAATGAACAACAACATTGGCATCCTGTGCTACGAAGAGAATTTCCTGAGCACATGGCTAATCTATTACAGCATCGTCCCTGAAAATAGCTCTGTTTCTGCATCGCTTTTTGTCTCTGCCGAGTCAAAACGTGCACAGTGCGGTTTTCTGGTGAAGGACATCGCTTTGCTGAACTTTGCTTTGCGCTTTATCTGGAATCGAGTGAACGCAGCCATTCAAAGGTCGCAGACAAACTTTCTTATCTTTATGTTCATTGATCTTCACACCAAAGATGATTTTGAGGACTCTTTTACCATGAACTGGGAAGATTATAAAAGTTAATGAAAATGTCGTCTTGTGGAAAAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280168 lncRNA downstream 165952 5297832 ~ 5298088 (-) True G246857
TU280154 lncRNA downstream 192687 5261892 ~ 5271353 (-) False G246847
TU280262 lncRNA upstream 95178 5564522 ~ 5564974 (-) False G246946
TU280263 lncRNA upstream 95178 5564522 ~ 5567290 (-) True G246946
TU280268 lncRNA upstream 98994 5568338 ~ 5888474 (-) True G246950
TU280315 lncRNA upstream 250447 5719791 ~ 5720606 (-) True G246981
TU279989 lncRNA upstream 348575 5817919 ~ 5824330 (-) True G246708
CI01000057_05442832_05459768.mRNA mRNA downstream 4272 5442784 ~ 5459768 (-) True CI01000057_05442832_05459768
CI01000057_05163258_05169859.mRNA mRNA downstream 293921 5162640 ~ 5170119 (-) True CI01000057_05163258_05169859
CI01000057_04927533_04931127.mRNA mRNA downstream 532913 4927533 ~ 4931127 (-) False CI01000057_04927533_04931127
CI01000057_04916382_04926437.mRNA mRNA downstream 537603 4916382 ~ 4926437 (-) False CI01000057_04916382_04926437
CI01000057_04891502_04906844.mRNA mRNA downstream 557196 4890235 ~ 4906844 (-) True CI01000057_04891502_04906844
CI01000057_05486207_05495209.mRNA mRNA upstream 16696 5486040 ~ 5495657 (-) True CI01000057_05486207_05495209
CI01000057_05553430_05562372.mRNA mRNA upstream 82214 5551558 ~ 5562448 (-) True CI01000057_05553430_05562372
CI01000057_05633248_05635383.mRNA mRNA upstream 163871 5633215 ~ 5635898 (-) True CI01000057_05633248_05635383
CI01000057_05827116_05827514.mRNA mRNA upstream 357749 5827093 ~ 5827514 (-) False CI01000057_05827116_05827514
CI01000057_05830634_05838724.mRNA mRNA upstream 360714 5830058 ~ 5839047 (-) True CI01000057_05830634_05838724
TU280085 other downstream 180423 5211110 ~ 5283617 (-) False G246780
TU279999 other downstream 532620 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU279998 other downstream 532897 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279491 other downstream 1566349 3895949 ~ 3897691 (-) True G246256
TU277965 other downstream 3542619 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU280026 other upstream 454196 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile