RNA id: TCONS_00016852



Basic Information


Item Value
RNA id TCONS_00016852
length 809
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_008417
representative False

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17752915 ~ 17757994 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CCAGCATTTTCTTCTGTCTTCCCCACAGCCCACCTTGATGTCTTCTCTGGAATGCAAGCTCAAGAGCCATATTTCCAAAGTCGTCCCTTTACCGAAAATGTCAACTTACAGATTGAGAATGTTTATGACCATCAACAGATGATGCACATGATGCCATCTGAGACTTTCAGCGACAGCAATTTCGGGTGTCCCACTTCTTCGCAGTGGTCTAATGGATATCTACCGTCCAATACGGACATATACGGGACAAGCCtgGTATCAAGGACACCCTCAGACCCCTTCAATCTCCCTAGTCCAGTCGATTACAACAGTTATTCGCCCCCTCAGTCCCACTCTTCATCTTCCTCGTGCTACAGCTCCCCAACAAGGATGGATCTGAGCTCTAGTTTCTCCCCAGAAAGCTACCACTATCAGCACTGCAACCTCCAGCATTGCTTTTGCCTGTCGCACTGCTCCGATATGCAGGAAGGCATGGCCACTACAGAGTATGCGCCCTACGGCTCTTCAGACTGTTTGTTTTCATACAACGACGACAGTTATTTCAGGAGGGATATCTTAAACCCAGAGATGTGCTacttataaaatgcatttttttccaagCACTTTGCGAGAGAATTCAGTGTCATAATTGATTGATTTTTCAATGcatttgttgtattatttttgtttttgtgtcaAAGAAAAAACAATGATAGAATGCATGATTGAGCTTAAATTTTGAGCAGCAAGGTTGATTGCAGAGGGCAAAAAGATGTGTGAGTATAATTTACAAATTAATCATTTATCTTTTgtacaataaacatattttt

Function


GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0001501 skeletal system development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0050840 extracellular matrix binding molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8357 No description available

Ensembl:

ensembl_id ENSDART00000155197

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00016839 lncRNA upstream 332494 17420113 ~ 17423619 (+) True XLOC_008413
TCONS_00016836 lncRNA upstream 378050 17376367 ~ 17378063 (+) True XLOC_008412
TCONS_00016834 lncRNA upstream 383185 17370296 ~ 17372928 (+) True XLOC_008410
TCONS_00016818 lncRNA upstream 835126 16914731 ~ 16920987 (+) True XLOC_008403
TCONS_00016805 lncRNA upstream 1710609 16035869 ~ 16045504 (+) True XLOC_008394
TCONS_00018766 lncRNA downstream 129176 17886198 ~ 17923213 (+) False XLOC_008419
TCONS_00016854 lncRNA downstream 130285 17887307 ~ 17922896 (+) False XLOC_008419
TCONS_00018767 lncRNA downstream 130326 17887348 ~ 17923627 (+) False XLOC_008419
TCONS_00016855 lncRNA downstream 144089 17901111 ~ 17922855 (+) False XLOC_008419
TCONS_00016856 lncRNA downstream 149755 17906777 ~ 17936128 (+) True XLOC_008419
TCONS_00016846 mRNA upstream 7794 17728180 ~ 17748319 (+) False XLOC_008416
TCONS_00016847 mRNA upstream 8286 17730567 ~ 17747827 (+) False XLOC_008416
TCONS_00016845 mRNA upstream 8337 17722054 ~ 17747776 (+) False XLOC_008416
TCONS_00016844 mRNA upstream 8337 17722054 ~ 17747776 (+) False XLOC_008416
TCONS_00016848 mRNA upstream 8337 17743136 ~ 17747776 (+) True XLOC_008416
TCONS_00016853 mRNA downstream 91568 17848590 ~ 17856878 (+) True XLOC_008418
TCONS_00016858 mRNA downstream 373087 18130109 ~ 18155991 (+) False XLOC_008421
TCONS_00016862 mRNA downstream 1106853 18863875 ~ 18988585 (+) True XLOC_008424
TCONS_00016865 mRNA downstream 1536722 19293744 ~ 19320615 (+) False XLOC_008429
TCONS_00016866 mRNA downstream 1536821 19293843 ~ 19317300 (+) False XLOC_008429
TCONS_00016838 other upstream 339506 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016835 other upstream 382198 17373789 ~ 17373915 (+) True XLOC_008411
TCONS_00016824 other upstream 654445 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016813 other upstream 926237 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016809 other upstream 1237030 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016857 other downstream 329680 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016870 other downstream 1567705 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016873 other downstream 1578645 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016899 other downstream 2233101 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016911 other downstream 2598773 20355795 ~ 20361972 (+) True XLOC_008446

Expression Profile


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