RNA id: TCONS_00018766


Basic Information

Item Value
RNA id TCONS_00018766
length 4377
lncRNA type inter_gene
GC content 0.46
exon number 37
gene id XLOC_008419
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17886198 ~ 17936128 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attgaTTTGCAGGTtaatatttcctatatttttaagtttttaaaATCTACAATATACTCATATTTATGTTGGAATAAACAAGAGATTATGTCTTCTTTCAGTATATATCTGGTGGCAGTCACTTCCCAGGCCGTGTCTGGCAGCACGGAGACATTGTGTGCACAGATCCATGAGCCCACTGAACCAGTTTCTCTAGTGGTGACTTTGAGGTCTGATGTTCAGAACATGACCATTCTCCAACAACGCTCCATAACCAGGGATTTCTACACATGTGTAACTTTTAAGGTCCCACTAGTCACTGTGGAGTCTGTGGCATCCATCAATGTTACAATCCGAGGACAGTCAACATTCATGAATAAAACCACTCAGATCCTCATTAGTCCACCCCAAAAACTTCTTTTTATTCAGTCTGACAGACCTATCTACAAGCCCGGACAAACagTTAAATTTCGTATTGTGTCTCTGGATACCAAGTTCTTGCCTTACAATCAACAGTTTAAAACTGTGGAACTTCAGGATCCATCCTCAAATCGCATTGGTCAATGGTTAAATCAGTCTACAAGGAGTGGCATTTTGGACTTGTTCCACTCCATCTCTCCAGAAGCCACTCAGGGTTACTATATGGTCACTGCCTGGGATGAGAAGAACCAACAAATATCACACCAATTTGAAATTAAAGAATATGTTCTGCCAAAATATGAGGTAAACATCGATTTTCCATCTGTTATAACTTCTCAGGACAACAATGCCCCTCTTAAAGTTTGTGCAAAatacACCTATGGGAAATCCGTGCTGGGAACTGTGAATGTTGAAGTGTGTGGGCAAAGCTGGTATTACTTTTATGAACGCAGATTCCCTGAAAATGATGGAacTGACAGGACTGGTTGTGCATCTTGGATGATAAATGCCACAGACTTTGGCTTAATCAATGGAGGAAATATCAATGTGCAAAGTAACGTAGAAGAGTCTGGAACAGGAGTAACTATATCAGGTACCACCACAGCTATGTTTACCAGGGAATATATCAATGTCTACTTTGAAGACACACCAGATACATACAAGCCTGGTATGGTCTTTAAGGGAAAGGTTGTGGTCACTAATCCACAATCCCAACCAATGAAAAATAAGCCAGTGGTTCTGTCTGCTTATTATGGAAATCAAAATATCAGCCTGACTTTGATTACAGATGTAAATGGCACTGTCCAGTTTTCCTTTAACACTTCAGACTGGTCAGAATCGTCAGTGTCTTTACAAGTTAGTGGTGTTTTTGGTGTCTATCGATTCCTAACAATTCACATGGGGGTTGACCCAACCGATTATATGGCTTTAGGATATTATCCATCAAGCTATCTTTACCTAAGACCCTTTCACTCCAAAAGCAAGAGTTTCCTGACGTTGATGAATCCTCCAAAGAAGCTCAGCTGTAACCGTGATGCAACAGTGGTGGCCAGTTACATCATTCAGGGCAGCACATTGAAAACAGGCCAGAAAACCTTGGATTTCTTCTACATTGTCTTGTCCAAAGGCAGCGTGGCGCATACTGGTCGTTTGTCTGTGAATGTGAATAGTaaaaaagAAAACAGGGGAGAAGTGACCTTCTCACTGAGGACGGCAGCTCTGGCTCCATACGCTCAGGTGGTGGTTTACACAATTCTTCCCAGTGGAGAAGCAGTAGCAGACAGTGTGAACTTCCCCATTGAAGAATGTTTGCCAAACAAGGTGTCCTTAAAGTTCTCATCTCCCACTGCACTGCCTGGAGAGAGGGCATCTTTTAGCCTGAAAGCCAGTCCTGGCTCCTTGTGCTCAGTGAGGGCCATAGATCAGAGTGTGCTGCTGCTGAGACCAGAGGCTGAGTTGAACGCAGACTCTGTGTTTGGAATGTTACCAGTCCAATTTTTGTCAGGTTACCCTTATAACGTTGAGGAGTTTGAGCTTTACAACTGCCCACCTTCCTGGGGAGGCGTAAGGGGCAAGCGCTCACGCTTCTATTACCCTTACTACGGCAACCGAAATGATGTCTATGAGATCTTTAGAGCAATTGGAATCAAAATCGCTACTAACTCTGATGTGAAAGCACCAGTTGATTGCAGTTATGGGATACCATTTGTTATCAATTCAGTTGCAGCAAAGGAGAATGAAGTAAATGATGTGGCCATGCCAGGGGCGGCTTTTCGTCCAGGTGTTATGAATCCAAATGAAAGGGTCCGCAAATTctttccagaaacatggatttggGATCTAATCCCTGTGGGGTATTCCGGCTCCGTGGATGTTGCAAAGACCGTCCCAGACACCATCACTACATGGGCAGCAGGGGCTTTCTGCACATCGCCTGTCGGATTCGGGCTGGCCCCCAGCACCAATCTCACTGCTTTTAAGCCGTTCTTTGTGAGCCTCACCCTCCCTTATTCTGTTATCCGTGAAGAAACGTTCACGCTCAAAGCCTCTGTGTTCAACTACCTCTCCAAATGCATCATGGTGAAGGTCACGCTGGCAGATTCGACTCAGTTCACAGCTCAGCCGTGTAGGGGTTGCACATACACTCAGTGTGTTTGTGCTGAAGAGAGCAAAACCTTCCAGTGGACTATTACACCTTCTGTTGTGGGAAAGGTGAACTTTACAGTGCGTGCCGAGGCAGTGAAGACCCGAGAACTGTGTGGCAATGAAGTGGTGACTTTGCCAGACAAAGGCAAAGTTGATACTGTGATGCAGAGCGTTCTGGTGGAGGTGGAGGGAACTAAACAGTCAGTCACTCAGAATGAGCTCATCTGCTTAACTGACCGTCCATACAACACATCCATCACCCTTGCTCTTCCTAAAGTTTTTGTGAAGGATTCTGCCAAATGCTTCATCACTGTTCTGGGAGATCTGATGGGTCGTGCTTTGAGAAACATTGGTGATCTTCTGGCTATGCCATACGGCTGTGGAGAGCAGAACATGCTGCAGTTTGCCCCAAATATTTACATCCTTCAATACCTGGAGAGCAGCGGACAGCTCACTCCTGAGATCAGAGCCCGAGCCGTAACCTTCCTACAGAGCGGCTATCAGAGAGAGCTGACATATAAGCATGGTGATGGATCTTACAGTGCTTTTGGCTCAAACGATCCTTCTGGTAACACATGGCTAACTGCATTTGTGATGAAGTCTTTTGGTGGGGCAAAGAGGTATATATTTATAGATCAGACCAGCATTGATGAGGCAAAGAATTGGCTGAGTCAGCAGCAGAAGACAAATGGCTGCTTCACCTCTGTGGGGCAACTGATCCACATTGAAATGATGGGTGGTGTCAATGATGAAGTCACTCTCTCTGCTTACATCACCGCAGCGCTGCTGGAGTTAGGCGTGCAGATTTCTGATCCCATGGTGGCTAGAAGCCTTGTATGTCTGAAGGAAGCTTCACGTAACATTACCAACACCTATGTGAATGCCTTGTTGTCCTATACATTCACACTTGCTGGAGATGGAGAAATGAGACTGAACCTCCTGTCCAAGCTGGACAATCAGGCCAGGAGAGAAGGTGCTGGACGATACTGGTCTCTGGTCAACAATGCTCAACAAACAAGCTCTGTGGAGGTTGAAATGACTGCCTACGTTTTGCTGGCTCTTCTCTCGGGACCCTCACTGCCTAGATTTGGTCTCAACTATTCAGCTGGAATAGTGCAGTGGCTGGGCAGACAGCAGAACGCCTTCGGGGGCTTCTCCTCCACACAGGATACTGTAGTAGCGCTCCAGGCCCTGGCTAAGTACAGCGCTGCCGTCTTCAATCCAGAAGGATCCATCGCCGTGACCGTGACCTCCCCATCAGGACAGAGAAACCAGTTCACTGTGAACCGCAATAACCGGCTGCTTTACCAGGAGAAACAGCTGACGGAAACTACTGGAACATACAAGCTCAGGGCAGAAGGCAAaggatgtgtgtttgtgcagTTTGCCTTGAACTACAACATCCCCCCTCCTCCTGATGCGTTGGCCTTcaacattaaaacaaatacagGAGTCTGCAGCAAAAACCAAGCTTTTACATTAAACGTCACTGTCCGGTATGATGGCAAACGAGAGGAGACCAACATGGTGATCATTAACGTCAGGCTGCTGTCTGGGTTTAAGCTGGATGAGGCGTCTCTGCAGGCCGTGAGTGACACTCTGAAGGAAGACCCCACCGTCAAACGTGTGGATCTGGATGAGGATCGTGTCATTGTCTATTTGGAGAGTCTGAAAAAGAAGCAGGTGAAGTCCATCAATCTGAGGCTTCAGCAGGACGTCCTGGTGCAGAAGCTTAAACCAGCTGTGGTGGAGGTCTATGACTACTACAAGACCAGTGAAATGTCTGTGACTGACTACACTTCATCTTGTAAATCAATTGCTCAGAACACAAAt

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0046031 ADP metabolic process biological_process
GO:0043010 camera-type eye development biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0045214 sarcomere organization biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0030239 myofibril assembly biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0048880 sensory system development biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0001654 eye development biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0007423 sensory organ development biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0150063 visual system development biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018916 lncRNA upstream 128204 17756469 ~ 17757994 (+) True XLOC_008417
TCONS_00016849 lncRNA upstream 130076 17752915 ~ 17756122 (+) False XLOC_008417
TCONS_00016839 lncRNA upstream 462579 17420113 ~ 17423619 (+) True XLOC_008413
TCONS_00016836 lncRNA upstream 508135 17376367 ~ 17378063 (+) True XLOC_008412
TCONS_00016834 lncRNA upstream 513270 17370296 ~ 17372928 (+) True XLOC_008410
TCONS_00016859 lncRNA downstream 217667 18140880 ~ 18143899 (+) True XLOC_008421
TCONS_00018917 lncRNA downstream 462377 18385590 ~ 18390132 (+) False XLOC_008422
TCONS_00018918 lncRNA downstream 462377 18385590 ~ 18401208 (+) True XLOC_008422
TCONS_00016860 lncRNA downstream 865203 18788416 ~ 18792858 (+) False XLOC_008423
TCONS_00018919 lncRNA downstream 865795 18789008 ~ 18790673 (+) False XLOC_008423
TCONS_00016853 mRNA upstream 29320 17848590 ~ 17856878 (+) True XLOC_008418
TCONS_00016850 mRNA upstream 129172 17752928 ~ 17757026 (+) False XLOC_008417
TCONS_00016852 mRNA upstream 129176 17756113 ~ 17757022 (+) False XLOC_008417
TCONS_00016846 mRNA upstream 137879 17728180 ~ 17748319 (+) False XLOC_008416
TCONS_00016847 mRNA upstream 138371 17730567 ~ 17747827 (+) False XLOC_008416
TCONS_00016858 mRNA downstream 206896 18130109 ~ 18155991 (+) False XLOC_008421
TCONS_00016862 mRNA downstream 940662 18863875 ~ 18988585 (+) True XLOC_008424
TCONS_00016865 mRNA downstream 1370531 19293744 ~ 19320615 (+) False XLOC_008429
TCONS_00016866 mRNA downstream 1370630 19293843 ~ 19317300 (+) False XLOC_008429
TCONS_00016867 mRNA downstream 1377017 19300230 ~ 19320615 (+) False XLOC_008429
TCONS_00016851 other upstream 129431 17755778 ~ 17756767 (+) False XLOC_008417
TCONS_00016838 other upstream 469591 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016835 other upstream 512283 17373789 ~ 17373915 (+) True XLOC_008411
TCONS_00016824 other upstream 784530 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016813 other upstream 1056322 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016857 other downstream 163489 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016870 other downstream 1401514 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016873 other downstream 1412454 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016899 other downstream 2066910 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016911 other downstream 2432582 20355795 ~ 20361972 (+) True XLOC_008446

Expression Profile

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