RNA id: TU277152


Basic Information

Item Value
RNA id TU277152
length 494
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G244178
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 165598 ~ 167187 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTAAATCTTCGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTCATAAAGTCGTTATTCTGTTTTTTTTTTGCCGCACAAAAAGTATTCTTGTCGCTTCATAACATTAAGATTGATCTACGATAGTCGCATGAACTGTTTTAAATATGTCTTTAGTACCTTTCTGGGCATTGAAAGTGTTAATTATCTTGCTGGCAATGGAGGCCTCACTGAGCCATTGGATTTTATCAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTGTTACGGGTGTGGAACAACATGAGGCAGACAGTGACGGCTGGCCTCCAAACAGATGTCCAGATACTGGTCCCTAAAGGCGATGCCGTATAAAGCTTTCCTAATCCATAAATAGCCCTTTTTATGGTCTCAGTCTATCTTATCTGACTCCGCTGCAGACAGAGGTGACCTCGCAATTGGCTCTGACTTCCATCTTGGGAAAGAGTGATCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277130 lncRNA downstream 19138 145357 ~ 146460 (-) True G244157
TU277123 lncRNA downstream 31963 128492 ~ 133635 (-) True G244150
TU277154 lncRNA upstream 3969 171156 ~ 173758 (-) True G244180
TU277248 lncRNA upstream 141599 308786 ~ 309057 (-) True G244264
TU277261 lncRNA upstream 176274 343461 ~ 343695 (-) True CI01000057_00339874_00343207
TU277308 lncRNA upstream 238396 405583 ~ 405895 (-) False G244304
TU277307 lncRNA upstream 238412 405599 ~ 405973 (-) True G244304
CI01000057_00009669_00010359.mRNA mRNA downstream 155239 9638 ~ 10359 (-) True CI01000057_00009669_00010359
CI01000057_00000056_00000860.mRNA mRNA downstream 163163 56 ~ 2435 (-) True CI01000057_00000056_00000860
CI01000057_00208733_00214195.mRNA mRNA upstream 41319 208506 ~ 214265 (-) True CI01000057_00208733_00214195
CI01000057_00249540_00251667.mRNA mRNA upstream 81586 248773 ~ 251771 (-) True CI01000057_00249540_00251667
CI01000057_00257594_00301277.mRNA mRNA upstream 90384 257571 ~ 301508 (-) True CI01000057_00257594_00301277
CI01000057_00314025_00331813.mRNA mRNA upstream 146359 313546 ~ 331813 (-) True CI01000057_00314025_00331813
CI01000057_00339874_00343207.mRNA mRNA upstream 172624 339811 ~ 343513 (-) False CI01000057_00339874_00343207
TU277369 other upstream 403343 570530 ~ 570914 (-) False G244358
TU277370 other upstream 403343 570530 ~ 571028 (-) True G244358
TU277905 other upstream 1634397 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 1752869 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 3724548 3895949 ~ 3897691 (-) True G246256

Expression Profile