RNA id: TU277313


Basic Information

Item Value
RNA id TU277313
length 504
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G244305
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 407220 ~ 407829 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTGGGGTCTCTACCAGGGTCTCCAGAGCGGACTGTGAGCACATGGTTCCTCCTTCACCTTCGTGGGCTGATGGGAAGCCGGAGACATGTGAGTGAGGTCTTTAGCTGATCTCTGGGATGCTTGGCAGTGGTTCAGATGCTGACGTACAGCGTCCACCTTGGAGTTGACAGATAGGAAGTTCATGGTCTCCCTCCAGCACTGGGAATAGCCGTCCAAGTGGGCTTTCTGTGGAGCTGAAGTCTTGGGCTGCAGCTGCTGTTTCAGGAAGACCACTGTCATCTCCAGGATGTCGGCTTTCTCCAGCTTGGTGTTTGGGTCCTGCTGGTGGAATTCCTTCTCCAGCATGGATTTGAGCTGCTCGATGCAGTTGTTTATGCGATCTCTGCGCATCTTTTCCACCACAGGTTTTCTTAATTTATGTTTCTCCTTGTTGGAAAGTTTGGAGTAGTCAGTCATGTAAGTTGGAGCCATTCTTTCAGATGGAGAGATGTTTCTCTGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277307 lncRNA downstream 1247 405599 ~ 405973 (-) True G244304
TU277308 lncRNA downstream 1325 405583 ~ 405895 (-) False G244304
TU277261 lncRNA downstream 63525 343461 ~ 343695 (-) True CI01000057_00339874_00343207
TU277248 lncRNA downstream 98163 308786 ~ 309057 (-) True G244264
TU277154 lncRNA downstream 233462 171156 ~ 173758 (-) True G244180
TU277275 lncRNA upstream 6083 413912 ~ 415609 (-) True G244287
TU277341 lncRNA upstream 67857 475686 ~ 475931 (-) True CI01000057_00475661_00476027
TU277348 lncRNA upstream 72114 479943 ~ 480154 (-) True G244338
TU277349 lncRNA upstream 72368 480197 ~ 480417 (-) True G244339
TU277375 lncRNA upstream 166707 574536 ~ 574885 (-) False G244359
CI01000057_00400397_00400972.mRNA mRNA downstream 6206 400057 ~ 401014 (-) True CI01000057_00400397_00400972
CI01000057_00381820_00385585.mRNA mRNA downstream 21635 381333 ~ 385585 (-) True CI01000057_00381820_00385585
CI01000057_00339874_00343207.mRNA mRNA downstream 63707 339811 ~ 343513 (-) False CI01000057_00339874_00343207
CI01000057_00314025_00331813.mRNA mRNA downstream 75407 313546 ~ 331813 (-) True CI01000057_00314025_00331813
CI01000057_00257594_00301277.mRNA mRNA downstream 105712 257571 ~ 301508 (-) True CI01000057_00257594_00301277
CI01000057_00409300_00412579.mRNA mRNA upstream 1339 409168 ~ 412625 (-) True CI01000057_00409300_00412579
CI01000057_00420698_00421063.mRNA mRNA upstream 12157 419986 ~ 421063 (-) True CI01000057_00420698_00421063
CI01000057_00459703_00467870.mRNA mRNA upstream 51114 458943 ~ 467870 (-) True CI01000057_00459703_00467870
CI01000057_00475661_00476027.mRNA mRNA upstream 67563 475392 ~ 476027 (-) False CI01000057_00475661_00476027
CI01000057_00534471_00559759.mRNA mRNA upstream 125759 533588 ~ 559759 (-) True CI01000057_00534471_00559759
TU277369 other upstream 162701 570530 ~ 570914 (-) False G244358
TU277370 other upstream 162701 570530 ~ 571028 (-) True G244358
TU277905 other upstream 1393755 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 1512227 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 3483906 3895949 ~ 3897691 (-) True G246256

Expression Profile