RNA id: TU277348


Basic Information

Item Value
RNA id TU277348
length 212
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G244338
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 479943 ~ 480154 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGCTCCACCCCCTCGTGGTCCAAAAAAATTGGGATGTCTTCGGGAGGGCAGAGGTCGACTTCTTCGCCTCAGAAGACAACTTTCGTTGCCCAATTTACTTTTCAAAGACCAAGGATGTGCTTGCCCACGACTGGCCCAGCCTCCTCCTGTACGCTTTTCCCCCAGTCGCTCTGATTCCCCGGGTTATCAGACGAATCAGGGAAGGTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277341 lncRNA downstream 4012 475686 ~ 475931 (-) True CI01000057_00475661_00476027
TU277275 lncRNA downstream 64334 413912 ~ 415609 (-) True G244287
TU277313 lncRNA downstream 72114 407220 ~ 407829 (-) True G244305
TU277307 lncRNA downstream 73970 405599 ~ 405973 (-) True G244304
TU277308 lncRNA downstream 74048 405583 ~ 405895 (-) False G244304
TU277349 lncRNA upstream 43 480197 ~ 480417 (-) True G244339
TU277375 lncRNA upstream 94382 574536 ~ 574885 (-) False G244359
TU277372 lncRNA upstream 94431 574585 ~ 574885 (-) False G244359
TU277374 lncRNA upstream 94431 574585 ~ 574786 (-) True G244359
TU277383 lncRNA upstream 95713 575867 ~ 576145 (-) True G244360
CI01000057_00475661_00476027.mRNA mRNA downstream 3916 475392 ~ 476027 (-) False CI01000057_00475661_00476027
CI01000057_00459703_00467870.mRNA mRNA downstream 12073 458943 ~ 467870 (-) True CI01000057_00459703_00467870
CI01000057_00420698_00421063.mRNA mRNA downstream 58880 419986 ~ 421063 (-) True CI01000057_00420698_00421063
CI01000057_00409300_00412579.mRNA mRNA downstream 67318 409168 ~ 412625 (-) True CI01000057_00409300_00412579
CI01000057_00400397_00400972.mRNA mRNA downstream 78929 400057 ~ 401014 (-) True CI01000057_00400397_00400972
CI01000057_00534471_00559759.mRNA mRNA upstream 53434 533588 ~ 559759 (-) True CI01000057_00534471_00559759
CI01000057_00561471_00562830.mRNA mRNA upstream 81075 561229 ~ 562857 (-) True CI01000057_00561471_00562830
CI01000057_00628126_00628851.mRNA mRNA upstream 147561 627715 ~ 630166 (-) True CI01000057_00628126_00628851
CI01000057_00873279_00873578.mRNA mRNA upstream 393120 873274 ~ 873578 (-) True CI01000057_00873279_00873578
CI01000057_00938618_00949690.mRNA mRNA upstream 457917 938071 ~ 949779 (-) True CI01000057_00938618_00949690
TU277369 other upstream 90376 570530 ~ 570914 (-) False G244358
TU277370 other upstream 90376 570530 ~ 571028 (-) True G244358
TU277905 other upstream 1321430 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 1439902 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 3411581 3895949 ~ 3897691 (-) True G246256

Expression Profile