RNA id: TU277369


Basic Information

Item Value
RNA id TU277369
length 385
RNA type TUCP
GC content 0.57
exon number 1
gene id G244358
representative False

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 570530 ~ 571028 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAGGACGAGAGAGGACCAGGCCTGGACTTTATTTTGTTTTATTATGTTTGTGTGGCCGGCAGACGTCCGCGAGGGTCTGCCGGCATTACTTTCGTTTTGTTCTTTGTTTATTTTATTAAAGTTTATTGTTTGAATGTTCGCCGGTTCCCGCCTCCTTCTTCCCCCATCATACGAACTGTGTTACATTGGTGCCGAAACCCGGGAGGAAGGAGGGACATGCTGTCGGAGAGCCCTCGCTGCTGAGGGGGATCGCGGTGCTGCGGAGTTCGGGCAGCGCGGGAGTGAAGACCGCGAGAGGCTGCCCGAGGCGGTGGTACTGGAGCCTTGTGAAAGGTGGGACGGAGACCCGGATGCCGTGCTCCTGGGACGAGGTGGGGTGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277349 lncRNA downstream 90113 480197 ~ 480417 (-) True G244339
TU277348 lncRNA downstream 90376 479943 ~ 480154 (-) True G244338
TU277341 lncRNA downstream 94599 475686 ~ 475931 (-) True CI01000057_00475661_00476027
TU277275 lncRNA downstream 154921 413912 ~ 415609 (-) True G244287
TU277313 lncRNA downstream 162701 407220 ~ 407829 (-) True G244305
TU277375 lncRNA upstream 3622 574536 ~ 574885 (-) False G244359
TU277372 lncRNA upstream 3671 574585 ~ 574885 (-) False G244359
TU277374 lncRNA upstream 3671 574585 ~ 574786 (-) True G244359
TU277383 lncRNA upstream 4953 575867 ~ 576145 (-) True G244360
TU277390 lncRNA upstream 60206 631120 ~ 631439 (-) True G244367
CI01000057_00561471_00562830.mRNA mRNA downstream 7673 561229 ~ 562857 (-) True CI01000057_00561471_00562830
CI01000057_00534471_00559759.mRNA mRNA downstream 10771 533588 ~ 559759 (-) True CI01000057_00534471_00559759
CI01000057_00475661_00476027.mRNA mRNA downstream 94503 475392 ~ 476027 (-) False CI01000057_00475661_00476027
CI01000057_00459703_00467870.mRNA mRNA downstream 102660 458943 ~ 467870 (-) True CI01000057_00459703_00467870
CI01000057_00420698_00421063.mRNA mRNA downstream 149467 419986 ~ 421063 (-) True CI01000057_00420698_00421063
CI01000057_00628126_00628851.mRNA mRNA upstream 56801 627715 ~ 630166 (-) True CI01000057_00628126_00628851
CI01000057_00873279_00873578.mRNA mRNA upstream 302360 873274 ~ 873578 (-) True CI01000057_00873279_00873578
CI01000057_00938618_00949690.mRNA mRNA upstream 367157 938071 ~ 949779 (-) True CI01000057_00938618_00949690
CI01000057_00956994_00965947.mRNA mRNA upstream 384719 955633 ~ 965947 (-) True CI01000057_00956994_00965947
CI01000057_01083731_01092073.mRNA mRNA upstream 512800 1083714 ~ 1092631 (-) True CI01000057_01083731_01092073
TU277905 other upstream 1230670 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 1349142 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 3320821 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 4357830 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 4357830 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127

Expression Profile