RNA id: TU277420


Basic Information

Item Value
RNA id TU277420
length 539
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G244391
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 837561 ~ 838099 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAAACTCGCTCAAATCCTTACGCTTGCCCATTTTTCCTGCTTCCAACACATCAACTTTGAGGACAAAATGTTCACTTGCTGCCTAATATATCCCACCCACTAACAGGTGCTGTGATGAAGAGATAAAATCAGTGTTATTCACTTCACCTGTCGGTGCTCATAATGTTATGCCTGATTGGTGTATATACTGACAGTTAACAGGCTATCTCATGGTCTATCAGAATATTAATGTTACACCAGCCATTGACCATGAGATGCAAACATAAATCAAGAGGAGACTAATTTACCCCAACCCAGGGTTCTTGTGCAGCTGATTAACCTTAACTTGACTCTATCCACTGAAGCAGCGGAAGGCCAAGGACATTAGACCTGGAATACGGAAGTACACCTGTACCATTATACAGTACTAGAGAGTGTCAACTGAGTATAAATGAATGCGAATAAATGGGTGTCTTTCACTCAGTGTCCGTTATTGACAATAACCCCAGATGGCCATTTCCATTCATACTGCCCCTATCTACCAAAAAAGAAATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277404 lncRNA downstream 77717 753930 ~ 759844 (-) False G244380
TU277406 lncRNA downstream 81960 753930 ~ 755601 (-) True G244380
TU277393 lncRNA downstream 204656 632576 ~ 632905 (-) True G244370
TU277390 lncRNA downstream 206122 631120 ~ 631439 (-) True G244367
TU277383 lncRNA downstream 261416 575867 ~ 576145 (-) True G244360
TU277491 lncRNA upstream 36 838135 ~ 839154 (-) True G244462
TU277492 lncRNA upstream 2697 840796 ~ 841279 (-) True G244463
TU277494 lncRNA upstream 7743 845842 ~ 847479 (-) True G244465
TU277415 lncRNA upstream 29640 867739 ~ 868213 (-) True G244386
TU277421 lncRNA upstream 30847 868946 ~ 869899 (-) True G244392
CI01000057_00628126_00628851.mRNA mRNA downstream 207395 627715 ~ 630166 (-) True CI01000057_00628126_00628851
CI01000057_00561471_00562830.mRNA mRNA downstream 274704 561229 ~ 562857 (-) True CI01000057_00561471_00562830
CI01000057_00534471_00559759.mRNA mRNA downstream 277802 533588 ~ 559759 (-) True CI01000057_00534471_00559759
CI01000057_00475661_00476027.mRNA mRNA downstream 361534 475392 ~ 476027 (-) False CI01000057_00475661_00476027
CI01000057_00459703_00467870.mRNA mRNA downstream 369691 458943 ~ 467870 (-) True CI01000057_00459703_00467870
CI01000057_00873279_00873578.mRNA mRNA upstream 35175 873274 ~ 873578 (-) True CI01000057_00873279_00873578
CI01000057_00938618_00949690.mRNA mRNA upstream 99972 938071 ~ 949779 (-) True CI01000057_00938618_00949690
CI01000057_00956994_00965947.mRNA mRNA upstream 117534 955633 ~ 965947 (-) True CI01000057_00956994_00965947
CI01000057_01083731_01092073.mRNA mRNA upstream 245615 1083714 ~ 1092631 (-) True CI01000057_01083731_01092073
CI01000057_01145522_01147560.mRNA mRNA upstream 305963 1144062 ~ 1147772 (-) True CI01000057_01145522_01147560
TU277370 other downstream 266533 570530 ~ 571028 (-) True G244358
TU277369 other downstream 266647 570530 ~ 570914 (-) False G244358
TU277905 other upstream 963485 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 1081957 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 3053636 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 4090645 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 4090645 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127

Expression Profile