RNA id: TU277511


Basic Information

Item Value
RNA id TU277511
length 221
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G244475
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 871777 ~ 871997 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAATCGAACACCTATGGGGAATTCTGAAGAGACAAGTTGAGCATCACTCTCCATCCAGCATCCAGTCTCTAAAAGAGGTCATTCTTGAAGAATGGAAAAAGATAGATGTTGCAAAATGTTGCCAACTTGTTCATTCCATGCCTAGAAGACTTGGTGCTGTCATTAAAAATCATGGAGGCCATACAAAGTACTAGATGTAGTAGTTTGTGTTGTGGGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277421 lncRNA downstream 1878 868946 ~ 869899 (-) True G244392
TU277415 lncRNA downstream 3564 867739 ~ 868213 (-) True G244386
TU277494 lncRNA downstream 24298 845842 ~ 847479 (-) True G244465
TU277492 lncRNA downstream 30498 840796 ~ 841279 (-) True G244463
TU277491 lncRNA downstream 32623 838135 ~ 839154 (-) True G244462
TU277402 lncRNA upstream 61903 933900 ~ 935859 (-) True G244379
TU277553 lncRNA upstream 79717 951714 ~ 952007 (-) True G244516
TU277562 lncRNA upstream 129126 1001123 ~ 1001347 (-) True G244522
TU277564 lncRNA upstream 136241 1008238 ~ 1029028 (-) True G244524
TU277642 lncRNA upstream 293179 1165176 ~ 1167400 (-) False G244594
CI01000057_00628126_00628851.mRNA mRNA downstream 241611 627715 ~ 630166 (-) True CI01000057_00628126_00628851
CI01000057_00561471_00562830.mRNA mRNA downstream 308920 561229 ~ 562857 (-) True CI01000057_00561471_00562830
CI01000057_00534471_00559759.mRNA mRNA downstream 312018 533588 ~ 559759 (-) True CI01000057_00534471_00559759
CI01000057_00475661_00476027.mRNA mRNA downstream 395750 475392 ~ 476027 (-) False CI01000057_00475661_00476027
CI01000057_00459703_00467870.mRNA mRNA downstream 403907 458943 ~ 467870 (-) True CI01000057_00459703_00467870
CI01000057_00873279_00873578.mRNA mRNA upstream 1277 873274 ~ 873578 (-) True CI01000057_00873279_00873578
CI01000057_00938618_00949690.mRNA mRNA upstream 66074 938071 ~ 949779 (-) True CI01000057_00938618_00949690
CI01000057_00956994_00965947.mRNA mRNA upstream 83636 955633 ~ 965947 (-) True CI01000057_00956994_00965947
CI01000057_01083731_01092073.mRNA mRNA upstream 211717 1083714 ~ 1092631 (-) True CI01000057_01083731_01092073
CI01000057_01145522_01147560.mRNA mRNA upstream 272065 1144062 ~ 1147772 (-) True CI01000057_01145522_01147560
TU277370 other downstream 300749 570530 ~ 571028 (-) True G244358
TU277369 other downstream 300863 570530 ~ 570914 (-) False G244358
TU277905 other upstream 929587 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 1048059 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 3019738 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 4056747 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 4056747 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127

Expression Profile