RNA id: TU277593


Basic Information

Item Value
RNA id TU277593
length 2252
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G244548
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1208498 ~ 1210749 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAGGCCCATTATACTGTTGTATTATGTATTATACTTTCAGACACAATTTAGTGACAGTGTGTTGCTGGGGTTCGACACAGCAAAACTTCACAGATAAGAAATCAGTGACTAGTGGCTGAGAAAAATCTCCAAGAGGGAATTGTGGATTGTTAATTAATACTTTCCCAGGCACTTTTTTCTACAGTTTACTTGCACTTTCTGTTTTCAAAAAGTACAGAAGAAACAATGATCTGGCATTTTGATAATGCTTCTAAAAATAGCCTAGCAATTTTATTGGAGGCAAAAATGCCACCCAAAATACTAAAATCATTTATCATTATGTCCACGCGGTGGCGCCAGAGATCTTTAAAATGCTTATTGAGATTAGACATATAAATGCTAAAAATAAGCACTATTAATAACTTTTTTATATTACATTTCAGATTTCTACTGTGGCATTGTAAATGTTCTGTATCAATCTTTGGCTAATATCTCAGTCAACAAACTTGATCAGAGCAAAGTTGGTTTGGGGAACAGATGTTACTTTACCACTTGTATGAGTTATAACAGTGTCCCGCAGCAAGAGGAGCCTGTATTTTCTGATTCATTCATGAGCAGTGGGGAGTGTGGGATTGCATACTGACTTCATTTATCTCTGTCAGCCTCAGTTACTACTGGTACACACACATAAATAATTTTTCAAAGAATTGTAGTTCTGTCAACTTAATACTTTGCTTATTATTAGAACTAGCAAGTGCTTGACATCTTCATATATAGCTTCTGCAGTTACAAGCGAGAAGATTTCAGGGTTTCTGAACTTGATGTCAAACAGACTCTTTCTTGACTTTAGTCCTAAAACAAAACTGCAATAGGTTATACACTGGTCAAAAAAATTAAAGGAACACTTTGAAAACACATCAGATTTCAATGGGGAAAAATATCATGCTGGATATCTATACTGATATGGACTAGGTAATGTGTTAGGAATGAAAGGATTTCACATCGTTTGACGGAAATGAAAATTGTCAATCTACAGAGGACTGAATTCAAAGACAGCCCGAAAATCAAAGTGAAAAAATGATGCAGCAAGCTAGTCCATTTTGCTGAAATTTCATTGCAGCAACTCAAAATGGTACCCAGTAGTTTGTATGGCCCCCACGTGCTTGTATGCATGCCTGACAACGTTGGGGCATGCTCCTAATGAGACGACGGATGGTGTCCTGGGGGTATTTCCTCCCAGATCTGGACCAGGGCATCACTGAGCTCCTGGACAGTCTGAGGTGCAATCTGGCGGCGTCGGATGGACCGAAACTTAATGTCCCAGAGGGGTTCTATTGGATTTAGGTCAGGCGAGCGTGGGGGTCATTCAATGGTATAAATTCCTATATCCTCCAGGAACTGCCTGCATACTCTCACCACATGAGGCCGGGCATTGTCGTGTACCAGGAGGAACCCAGGACCCACTGCACCAGCGTAGGGTCTGACAATGGGTCCAAGGATTTCATCCCAATACCTAATGGCAGTCAGGGTGCCATTGTCTAGGCTGTAGAGATCTGTGCGTCCCTCCATGGATATGCCTCCCCAGATCATCACTGACCACCAAACCGGTCATGCTGAATGATGTTACAGGCAGCATAACGTTCTCCACGGCTTCTCCTGACCCCTTCGTGTCTGTCACATGCTCAGGGTGAACCTGCTCTCATCTGTGAAAAGCACAGGGCACCAGTGGCGGACCGGCCAATTCTGGTGTTCAATGGCAAATGCCAATTGAGCTGCATGGTGCTGGGCAGTGAGCACAGGACCCACTAGAGGACGTCGGGCCCTCAGGCCACCCTCATGAAGTCTGTTTCTGATTGTTTGGTCAGAGACATTCACACAAGTGGCCTACTGGTCATTTTGTGGGGCTCTGGCGGTGCTTATCCTGTTCCTCCTTGCACAAAGGAGCAGATACCGGTCCTGCTGATGGGTTAAGGACCTTCTATAGCCCTGTCCCAGTCTCCTCTATGCTCTTGAGACTGTGCTGGGAGACACAGCAAACCTTCTGGCAATGGCACATATTGATGTGCCATCCTGGAGGAGTTGGACTGCCTGTGCAACCTCTGTAGGGTCCAGGTATCGCCTCATGCCACCAGTAGTGACACTGACCCTAGCCAAATGCAAAACTAGTGAAAAATAGTCAGAAAAGATGAGTAGAGGAAAAAATGTCAGTGGCCTCCACCTGTAAAACCATTCCTGTTTTAGGGGTCGTCTCATTGTTGCCCATCTAGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277657 lncRNA downstream 11663 1196572 ~ 1196835 (-) True G244606
TU277603 lncRNA downstream 15259 1192945 ~ 1193239 (-) True G244558
TU277643 lncRNA downstream 41006 1166310 ~ 1167492 (-) True G244594
TU277642 lncRNA downstream 41098 1165176 ~ 1167400 (-) False G244594
TU277564 lncRNA downstream 179470 1008238 ~ 1029028 (-) True G244524
TU277661 lncRNA upstream 52278 1263027 ~ 1263250 (-) True G244610
TU277667 lncRNA upstream 73379 1284128 ~ 1284855 (-) True G244616
TU277669 lncRNA upstream 75333 1286082 ~ 1286340 (-) True G244618
TU277670 lncRNA upstream 76298 1287047 ~ 1287383 (-) True G244619
TU277700 lncRNA upstream 112106 1322855 ~ 1323236 (-) True G244633
CI01000057_01189209_01190703.mRNA mRNA downstream 17795 1188913 ~ 1190703 (-) True CI01000057_01189209_01190703
CI01000057_01145522_01147560.mRNA mRNA downstream 60726 1144062 ~ 1147772 (-) True CI01000057_01145522_01147560
CI01000057_01083731_01092073.mRNA mRNA downstream 115867 1083714 ~ 1092631 (-) True CI01000057_01083731_01092073
CI01000057_00956994_00965947.mRNA mRNA downstream 242551 955633 ~ 965947 (-) True CI01000057_00956994_00965947
CI01000057_00938618_00949690.mRNA mRNA downstream 258719 938071 ~ 949779 (-) True CI01000057_00938618_00949690
CI01000057_01219430_01223491.mRNA mRNA upstream 8681 1219430 ~ 1223491 (-) True CI01000057_01219430_01223491
CI01000057_01235433_01244747.mRNA mRNA upstream 24428 1235177 ~ 1245182 (-) True CI01000057_01235433_01244747
CI01000057_01252690_01256408.mRNA mRNA upstream 41898 1252647 ~ 1256408 (-) True CI01000057_01252690_01256408
CI01000057_01261251_01262315.mRNA mRNA upstream 49937 1260686 ~ 1262315 (-) True CI01000057_01261251_01262315
CI01000057_01356170_01359401.mRNA mRNA upstream 144660 1355409 ~ 1359970 (-) False CI01000057_01356170_01359401
TU277370 other downstream 637470 570530 ~ 571028 (-) True G244358
TU277369 other downstream 637584 570530 ~ 570914 (-) False G244358
TU277905 other upstream 590835 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 709307 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 2680986 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 3717995 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 3717995 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127

Expression Profile