RNA id: TU277809


Basic Information

Item Value
RNA id TU277809
length 340
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G244706
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1448343 ~ 1448682 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCAGGTAAGTGGGTTGGGATATGGAATGTCTTGGTTCAGCTTATCTGTAAGTGATGCAGTCTTTGTTTCTTTGCCAGGAGATCCAGTAACCAACGAGCATGGAGACGACGGAGAGCAGAGGAATGCGGAGAACTAGGACTGCTGGTGGGAACAACTGGTGAGTAGCGCACACGTAAGACGATCCGGAAACACAAGGTAAGGTTAATCACAGATAAGAGGGTCGTGGAGCTTGACATAGGCATAGACAAAGACGTTGTGCTTATCCATAGACGTAATGCTTTCCATTGACGCAACCCAACATAAAGTGAAGTGAGTGAGGACCTTATGAATGAGTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277806 lncRNA downstream 1990 1445785 ~ 1446353 (-) True G244703
TU277805 lncRNA downstream 3546 1444022 ~ 1444797 (-) True G244702
TU277763 lncRNA downstream 4814 1443198 ~ 1443529 (-) True G244675
TU277740 lncRNA downstream 59763 1387467 ~ 1388580 (-) True G244652
TU277731 lncRNA downstream 92302 1355440 ~ 1356041 (-) True CI01000057_01356170_01359401
TU277826 lncRNA upstream 64301 1512983 ~ 1523985 (-) True G244720
TU277837 lncRNA upstream 79350 1528032 ~ 1528713 (-) True G244730
TU277838 lncRNA upstream 80259 1528941 ~ 1529337 (-) True G244731
TU277839 lncRNA upstream 81911 1530593 ~ 1530797 (-) True G244732
TU277831 lncRNA upstream 83231 1531913 ~ 1532209 (-) True G244724
CI01000057_01356170_01359401.mRNA mRNA downstream 88373 1355409 ~ 1359970 (-) False CI01000057_01356170_01359401
CI01000057_01261251_01262315.mRNA mRNA downstream 186028 1260686 ~ 1262315 (-) True CI01000057_01261251_01262315
CI01000057_01252690_01256408.mRNA mRNA downstream 191935 1252647 ~ 1256408 (-) True CI01000057_01252690_01256408
CI01000057_01235433_01244747.mRNA mRNA downstream 203161 1235177 ~ 1245182 (-) True CI01000057_01235433_01244747
CI01000057_01219430_01223491.mRNA mRNA downstream 224852 1219430 ~ 1223491 (-) True CI01000057_01219430_01223491
CI01000057_01471460_01487413.mRNA mRNA upstream 22445 1471127 ~ 1487762 (-) True CI01000057_01471460_01487413
CI01000057_01542990_01546030.mRNA mRNA upstream 94115 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_01559593_01572133.mRNA mRNA upstream 110865 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01707526_01708449.mRNA mRNA upstream 258813 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01801708_01806454.mRNA mRNA upstream 352846 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
TU277370 other downstream 877315 570530 ~ 571028 (-) True G244358
TU277369 other downstream 877429 570530 ~ 570914 (-) False G244358
TU277905 other upstream 352902 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 471374 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 2443053 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 3480062 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 3480062 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127

Expression Profile