RNA id: TU277826



Basic Information


Item Value
RNA id TU277826
length 1429
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G244720
representative True

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1512983 ~ 1523985 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GATCCTTTTTTAATTATTAAAATGTTGCAGATTTTGCAAGGGCTATGTAAACTTATTAATCACAGCTGTTCATTGAAGGTGGAGCAACATGTAGCAACAGTGTGTGGGTTTTTGTTATATACTGTTCAGTTGTTGATTTTTTTTCTTTGAAACCTGCAATTTATCGTAACTCACAACGTTTCTAATTTTTCTATAACATACTGTTCACAAAATTTATTCATAGTATTCATGGTGTCAAAGCTCTCAACAGCTCAATGGAGCGAATCATGTTAAAGTTGAAGTGTGTAATCGATGCAGCACCAAACTAATGTGTAAAAACCAGCCATCAACCTACAACTGCCTTATAGTTTTCTCTGCATATGAAGCTAGGATAGAACATATCATCAAATACAAATTGCACACTTCATCTTTGATGTTGTTAGACACTTTCTATCATTGAGCTTCCGTTGTTATTTTGCAAAAACTTTTAATTAACCCATGAAGTGACCTAAAGCTGAGAGCCTGAAGGAAGAAAGTAATGAGACACCGAACTTTAACCGGTCAGGCCAGAAACCCCCGATTAAACAGTCAAGACTGCTGATTCTGATGCTATCATCACTAGAAAAAGATGAAAAAAAGAAAAGAAAATCTAAATATTCCCACCACACAGCATGTTACATGATAGCACAAATTCATTTCCACTTGCAGAACTATTCTCAAATGAGGGCACACAGGTTACACTCAATAAGATCATTTGTTATTTTTACAATTTGCATGTATAACAAATAAACATTTAAAAAAAAGATTAGAATGATGTACAGTATTCTGCTGTGCGCACCACTACATCCATGGTTTCTGTCCAATGGGAGCTCCTGAGGCAGGACTGCTCATTGGTTGCTGCAGCACATGGGGAGTGGTCAGGAACAGGGAGGAATTCTCATGAGTCCGGAAAGAAAGAAAAAAAAGAGGAGGAATGCTCAGCCTTGCGTGTGTGAATGTGTTCTGATGAAGGTAGAGAAGAAGACGACAGAAGCTCTGAGCTCAGTTGCTGTAGATCTGTCCTTCGGGAGGCTGCGGCAGCTTCATGTTTTCTTTGCACATCATGAGTCGTCGCAGCTCCTGCAGGACCACACGGATGCTGTAGGAATTCTGCCACTTGGCCAGTGAGGACACAGCTCGCATATCAACCACACCATTTGAGTTATGCACTCCATTCAAGTTGATCTTTGTCACAAAGCGAACAAAAGGGGGCGTTTCTGGATATCTTGGTCCACATTCTACTCTGAGGCTGTACATCCTGTTCTCATAGATAGTCCTCGGGGGTCCGATTATCATTCCTCTCCAGCGTGTGAGGGTCATGTCCTCATCGTCTTCCAGACCCCAGCTCACCGTCCCATCTCCAACACCCTTCTGACCCTCCTCAAGCTCCTCTAGCAGCCGGAAGTTACGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU277809 lncRNA downstream 64301 1448343 ~ 1448682 (-) True G244706
TU277806 lncRNA downstream 66630 1445785 ~ 1446353 (-) True G244703
TU277805 lncRNA downstream 68186 1444022 ~ 1444797 (-) True G244702
TU277763 lncRNA downstream 69454 1443198 ~ 1443529 (-) True G244675
TU277740 lncRNA downstream 124403 1387467 ~ 1388580 (-) True G244652
TU277837 lncRNA upstream 4047 1528032 ~ 1528713 (-) True G244730
TU277838 lncRNA upstream 4956 1528941 ~ 1529337 (-) True G244731
TU277839 lncRNA upstream 6608 1530593 ~ 1530797 (-) True G244732
TU277831 lncRNA upstream 7928 1531913 ~ 1532209 (-) True G244724
TU277829 lncRNA upstream 11645 1535630 ~ 1535921 (-) True G244722
CI01000057_01471460_01487413.mRNA mRNA downstream 25221 1471127 ~ 1487762 (-) True CI01000057_01471460_01487413
CI01000057_01356170_01359401.mRNA mRNA downstream 153013 1355409 ~ 1359970 (-) False CI01000057_01356170_01359401
CI01000057_01261251_01262315.mRNA mRNA downstream 250668 1260686 ~ 1262315 (-) True CI01000057_01261251_01262315
CI01000057_01252690_01256408.mRNA mRNA downstream 256575 1252647 ~ 1256408 (-) True CI01000057_01252690_01256408
CI01000057_01235433_01244747.mRNA mRNA downstream 267801 1235177 ~ 1245182 (-) True CI01000057_01235433_01244747
CI01000057_01542990_01546030.mRNA mRNA upstream 18812 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_01559593_01572133.mRNA mRNA upstream 35562 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01707526_01708449.mRNA mRNA upstream 183510 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01801708_01806454.mRNA mRNA upstream 277543 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01904867_01921400.mRNA mRNA upstream 380548 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
TU277370 other downstream 941955 570530 ~ 571028 (-) True G244358
TU277369 other downstream 942069 570530 ~ 570914 (-) False G244358
TU277905 other upstream 277599 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 396071 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 2367750 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 3404759 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 3404759 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127

Expression Profile