RNA id: TU277838


Basic Information

Item Value
RNA id TU277838
length 397
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G244731
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1528941 ~ 1529337 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCATTTCTGTCTCAGAGACTCAACATGGCTGTTTGAGAGCTGCTCGGCGTTGAGAGCGCACGCGCCAAACACAGCGCACAAACAGTCAAACGCTGACTGACCCAGACTGACTGAAGTATGTTTTTTTTCTTTTCGCACAGCTAAACAAGCAAGCATGGCGCTAGCAACACGAGTGGTTCGATTCCAAGGGGTACAAACAGATTATTTATTTTTTTATTTTTTTTAAGTATACCTCGAAGGCAGTGTAAATCTCTTTAGATAAAAGCATCTGACAAATTCATAAATGTAAATCTTCAATTTCTTATGTAGCCTACAAGTGTGCATACTGAAGAATCATCATTGCATTTGTATGTGTCAAGGCATGTTTTTTGGCACATAGCACAATGTATTATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277837 lncRNA downstream 228 1528032 ~ 1528713 (-) True G244730
TU277826 lncRNA downstream 4956 1512983 ~ 1523985 (-) True G244720
TU277809 lncRNA downstream 80259 1448343 ~ 1448682 (-) True G244706
TU277806 lncRNA downstream 82588 1445785 ~ 1446353 (-) True G244703
TU277805 lncRNA downstream 84144 1444022 ~ 1444797 (-) True G244702
TU277839 lncRNA upstream 1256 1530593 ~ 1530797 (-) True G244732
TU277831 lncRNA upstream 2576 1531913 ~ 1532209 (-) True G244724
TU277829 lncRNA upstream 6293 1535630 ~ 1535921 (-) True G244722
TU277841 lncRNA upstream 30462 1559799 ~ 1560502 (-) True G244734
TU277843 lncRNA upstream 33877 1563214 ~ 1563431 (-) True G244736
CI01000057_01471460_01487413.mRNA mRNA downstream 41179 1471127 ~ 1487762 (-) True CI01000057_01471460_01487413
CI01000057_01356170_01359401.mRNA mRNA downstream 168971 1355409 ~ 1359970 (-) False CI01000057_01356170_01359401
CI01000057_01261251_01262315.mRNA mRNA downstream 266626 1260686 ~ 1262315 (-) True CI01000057_01261251_01262315
CI01000057_01252690_01256408.mRNA mRNA downstream 272533 1252647 ~ 1256408 (-) True CI01000057_01252690_01256408
CI01000057_01235433_01244747.mRNA mRNA downstream 283759 1235177 ~ 1245182 (-) True CI01000057_01235433_01244747
CI01000057_01542990_01546030.mRNA mRNA upstream 13460 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_01559593_01572133.mRNA mRNA upstream 30210 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01707526_01708449.mRNA mRNA upstream 178158 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01801708_01806454.mRNA mRNA upstream 272191 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01904867_01921400.mRNA mRNA upstream 375196 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
TU277370 other downstream 957913 570530 ~ 571028 (-) True G244358
TU277369 other downstream 958027 570530 ~ 570914 (-) False G244358
TU277905 other upstream 272247 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 390719 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 2362398 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 3399407 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 3399407 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127

Expression Profile